RNA id: TU864797


Basic Information

Item Value
RNA id TU864797
length 3006
lncRNA type read_through
GC content 0.47
exon number 6
gene id G760718
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90362653 ~ 90400472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGATACTTGTGTGTTGTTGTCTAAGTCTCTGGTCCAAGACCCCTGGCTGAAGACATTAAGTAACACTTGTGTGTGGTAGTGTTGAGTTTGTTCCCAGGTACATCAAGACGTCGGGTAACGCCACAGTGGACCACCTGTCTAAGTACCTGGCTGTGCGTCTGGCTCTGGAGGAACTGAGGAAGAACGGAGAGGCCAGCCCTGTCAATGTAGACGCTGCCTCAGAGAAACAATACACCATTTATATCCCTACAGCCAACGGCCAGTTCACGGTGCTGAACGGGTCTTTCTCTCTGGAGCTTGTCAGTGAGAAGTACTGGAAGGTGAACAAACCCATGGAGCTGTACTTCGCCCCCACCAAGGAGCACAAGTAGACCGCCTGGAGTACACCTGGGGGGGTAGACCGCCTGGAGTACACCTGGAGCACACCTGGGGGGTAGACCACCTGGAGTACACCTGGGGGGTAGACCACCTGGAGTACACCTGGAGCACACCTGGGGGGGTAGACCACCTGGAGCACACCTGGGGGGGTAGACCAACTGGAGCACACCTGGGGGGGTAGACCAACTGGAGTACACCTGGGGGTAGATCACCTGGAGTACACCTGGGGGTAGATCACCTGGAGTACACCTggggcaccctatttcctatgtagggctttggccaaaagtagtgcactatatagggaatagggtgccctttagGACACAACCCTGGATGAGACCTGCCAGGAGGACGAGGTGTCTAATGGACTCTCAACAtctatacatctctctctacatctctctctctctctctctctctctctctctacatctccctctctctctacatctctctttctctacatctctctctctctctctacatctatctctctgtctctctctctctctacatctctctcttacatctctctctacatctctctctctctctacatatctctctacatctctctctctacatctcgcTCTCgtcatctctctcacatctctctctcgctctctacatctctctctcgctctctacacctctctctctgtctggtgtgaatttgttggtaacatgtTAGTATAGGGGGTATGTATAAATGTATCTGATATAGTCACTAGCCATGCAGAACGTCACTGCAATTCCAGGGTGGCGTTCAGGAGGGCACTGCATACCGAACGCTGCTGCTAGAAATGGATTTGTCATGATTCCTTACTCTACATGTCAgagtatgttctctctctctctctacatcgctCTCTCCAGGGCTGTCTACCTGCTTACCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTCAGGTCCTAATAcgggggtggtacctggtagttTCAGGGCCTTCTACCTGCTACCTGCTTACCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTCAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTCAGGTCCTAATAcgggggtggtacctggtagttTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGGCTTCTACCTGCTCTGGATAACTGTGGCTGCTTCAGGATGTTGTATGGTCTTTTTGTATCTGGGGGACGGCGAACTGGGTTGGGGACGGGGTGGGATGTGTTTTGGGATATATTAGCGGTGTTTCCGTACAGAGAACTaatgtttttgttgtgtttttaAAAACATGTGCAGCAGAGAGGTCATGAAGCTGTTTTCTATAAACCCACAATCCTGTTGTATTTGTTGACATTGTGtgactcaaatggcaccctatttccctatgtagtgcactacttttgacaagggcccatagggaatagagtgcacttTAGGACAGAAccatattgatgtcacttcaCCTGACTGATCTGGGAGCCATGACAACATATCATTGGTTAAATCATCACAGTGGATGGAGTAaggtctactgtccctctcctgttccctTTAACCAAAATGGCAAACTAGGGCTTTGATACATAATAATTAGGGTGCTCCAATGACAAACAAACGTCTGCTATGACATTATGTTATAGTAACCTGAAGAGACAGACTTCATCTCTTTGTTTTCCTTCTCTAGTCTGCTTGGCTCTCATTCTGTTCTCCTAGAAAACGCTTGATGTTAACagcagggttgggctcaattcctCTTCACTTCAATCAGATCAGGAAGTGGAATAATCTCTAAATCTTCCATCTCCCTTAGTCGGATGAATCTCTTCTGTGCTGTGACTTCTTCAAGGATCCAGTTGTTTTTTTGAAAACAATGAACAATTTTCTATTCCTGATTTGAGTTTGAATCCACCTCCTCCTGAATTGATTAAGGCTAAAATTGACCCCTAACCCTGCTTCACTGAAACATTTCATTAGCTCAGCGGGCTAACAGTCCAGTTCAATACAACTAGGCTGGGTATTCTTTCTGTGTATTGTCCAGGACCTTTGTTCATGCCAACATCTCAACCACATTTTGGGAGAAAGAATGAATGAATCGTTCATTAACAGGTCAGACGTCATCAGCTGTATGGAAGTAATGTCTGTACATAAACCAACCAGCTCCATTCATCATCTTCAAGCTTAGTGTGAGATAGAAGAGGGACCCAAATCGTGTTTTctcccccaaaaaaatgtttcaGAACGACGATACCGTGGAAGAAAAATGTGCAAATGTACTTTTTAGAAGCATGTTCAGTTTTACAGTTTGACAACATCCTTTGTATAAATATCAGTTATTATTGTTGAAAGTGTAAATGGAAATACTTGTTtggaaaataaacaaaacaatgtgTGTTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864839 lncRNA upstream 2459 90382732 ~ 90386980 (+) True G760734
TU864759 lncRNA upstream 45375 90343210 ~ 90344064 (+) True G760715
TU864703 lncRNA upstream 94093 90293230 ~ 90295346 (+) False LOC110515626
TU864849 lncRNA downstream 18914 90419386 ~ 90420839 (+) True G760742
TU864853 lncRNA downstream 19087 90419559 ~ 90420283 (+) True G760743
TU864887 lncRNA downstream 99573 90500045 ~ 90502213 (+) True G760773
TU864902 lncRNA downstream 139632 90540104 ~ 90541147 (+) True G760788
TU864909 lncRNA downstream 162195 90562667 ~ 90562894 (+) True G760794
XM_036986765.1 mRNA upstream 94089 90228661 ~ 90295350 (+) False LOC110515626
XM_036986766.1 mRNA upstream 94089 90228661 ~ 90295350 (+) False LOC110515626
XM_036986767.1 mRNA upstream 94089 90228661 ~ 90295350 (+) False LOC110515626
XM_036986763.1 mRNA upstream 294822 90031024 ~ 90094617 (+) False st6galnac3
XM_036986771.1 mRNA downstream 39328 90439800 ~ 90545258 (+) True LOC110517228
XM_036986776.1 mRNA downstream 191518 90591990 ~ 90646224 (+) False LOC110531056
XM_036986775.1 mRNA downstream 191531 90592003 ~ 90650861 (+) False LOC110531056
XM_036986772.1 mRNA downstream 191532 90592004 ~ 90652705 (+) False LOC110531056
XM_036986773.1 mRNA downstream 191532 90592004 ~ 90652705 (+) True LOC110531056
TU864778 other upstream 362 90374087 ~ 90389077 (+) False G760718
TU864640 other upstream 180480 90160270 ~ 90208959 (+) False G760623
TU864637 other upstream 180480 90161314 ~ 90208959 (+) True G760623
TU863611 other upstream 692532 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 730092 89568003 ~ 89659347 (+) True LOC118965583
TU864957 other downstream 299823 90700295 ~ 90709652 (+) True LOC110530875
TU864974 other downstream 336819 90737291 ~ 90743084 (+) True ndufb3
TU864981 other downstream 369645 90770117 ~ 90771037 (+) True G760857
TU865491 other downstream 552520 90952992 ~ 90955079 (+) False G761244
TU865499 other downstream 552520 90952992 ~ 90955079 (+) False G761244

Expression Profile