RNA id: TU865501


Basic Information

Item Value
RNA id TU865501
length 1790
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G761244
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90952992 ~ 90972563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCACAACAGCTTTTTATCTGAAAAGACACACTATAACATGGTTCCACTAGGCAGTCAGCATTACATCCTGTCACTGGTCAGACTGATCATTAGTAACATCACATCCTGTCACTGGTCAGACTGACCATTAGTGACATCACATCCGGTCACTGGTCAGACTGACCATTAGTGACATCACATCCTGTCACTGGTCAGACTGACCATTAGTAACATCACATCCTGTCACTGGTCAGACTGACCATTAGTGACATCACATCCTGTCACTGGTCAGACTGACCATTAGTGACATCACATCCTGTCACTGGTCAGACTGACCATTAGTGACATCACATCCTGTCACTAGAAAGCAGTACAGAATCAGTCACCAGCTCAATATCTCTTTGTAATAGCAACACGTATCAGCAAACACCACACATTTTCAAAGTCTGAAGGATTATTTCATTTTGGTTATTTTACTTAGTTAAAATATCCTACATACACAGCACCCTTTTCTTAAGTCCCTGAGGACCAAAGGCAGGGGATATTGTTAAGAGGCTACAACAGTCAGTGTTGTCTTCTCTACCCCAGCACACACACGGAGGGCTCAGTCATTATAAGGGTACTCTGCTGCATGTTGCCatgctaaataaatacattagaaAAGCTCATAAATGTCACTTTTCCTTATTTAGTGTCCTTGCTTTGGCCTGATAGGGCTCCCACATAGGTCTCTGTCCCAAACTAAAGCACTACGTTGGAATAGGGTTCCACTAGAGGTGTCCTCGAGCTGCTCCAGGCCTGGAGAGAGATGACTCCACTAGAGGTGTCCTGGAGCTGCTCCAGGCCTGGAGAGAGATGACTCCACTAGAGGTGTCCTGGAGCTGCTCCAGGCCTGGAGAGAGATGACTCCACTAGAGGTGTCCTCGAGCTGCTCCAGgccaatcactttttgacagcccTTTTGATTTAAACACAACGTTCCGCCCATGGAAGAAGAGGTCAGGTAGTGACGTTtgggacctgaatgccaaaataTTCAGGAGATAAAGGTCCTCAAAGTCGACCCGTattgcataccccaccataccatgagacatcacTGGAAAAGATGTATGGTTGAGATTGATATAATTTAAgagcttacaaacagggttgtcataCGATTTAATAATTtattgcatttaaaaaaataaaaaaaaatgtggacATTATTTAATGCTTTAACATAAATTATCTAACAAAGTGTAAACTCTTTTTCATATCTGCATTTTGTAGCTTAGGCCCTATTTCACATCATCTGAGGTTGTGTTGTGCCCTccatcggttgagacacaacatgctcttgaatacagaaAGGGTGTCATACATTCTAataggtcaactttgagcacctttatgTCTTcgatgttttggcattcaggtcccgaaagtcactttctgaccacttctacaaTGGGTGAGTACGAATGGAAGGTTTTGTTCAAATCGAAAGGGATGATATCAAAAGGTCATCGAAATCAAATGGATTTCCCCAGATCCCAGATGGTGACTCAGTGGAGAccaggacagggacagagaagtGGAACAGCGTGGAGACCAGGGCAGGGACAGAGAAGTGGAACAGCGTGGAGACCAGGGCAGGGACAGAGATGTGGAGCAGCAGAGAGATGGACATGACGGCAGATCCCAGATGGTGACCCAGTAGATCTCTGTGAACTAGTAGATCTAAGAATCTGCCAGGGCCAGGTTCTTAGACTGGATCTTAGCCAAGTGGTCTAAAATCCCTGCTTCTATCTTGTCACACTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU865474 lncRNA upstream 29065 90921593 ~ 90923927 (+) True G761232
TU865467 lncRNA upstream 33422 90918801 ~ 90919570 (+) False G761231
TU865470 lncRNA upstream 33658 90918326 ~ 90919334 (+) False G761231
TU865553 lncRNA downstream 29215 90984294 ~ 90987289 (+) False G761268
TU865550 lncRNA downstream 29506 90984585 ~ 90987289 (+) True G761268
TU865564 lncRNA downstream 41352 90996431 ~ 90997220 (+) True G761275
TU865570 lncRNA downstream 52490 91007569 ~ 91040568 (+) False G761280
TU865607 lncRNA downstream 104973 91060052 ~ 91061991 (+) True G761300
XM_036986792.1 mRNA upstream 36255 90913773 ~ 90916737 (+) True LOC110530903
XM_036986791.1 mRNA upstream 122467 90799988 ~ 90830525 (+) True LOC110530865
XM_021614155.2 mRNA upstream 156054 90779252 ~ 90796938 (+) True LOC110530867
XR_005053010.1 mRNA upstream 167291 90779123 ~ 90785701 (+) False LOC110530867
XM_036986786.1 mRNA upstream 209908 90737231 ~ 90743084 (+) False ndufb3
XM_036986799.1 mRNA downstream 284807 91239886 ~ 91260968 (+) True rgs20
TU864981 other upstream 181955 90770117 ~ 90771037 (+) True G760857
TU864974 other upstream 209908 90737291 ~ 90743084 (+) True ndufb3
TU864957 other upstream 243340 90700295 ~ 90709652 (+) True LOC110530875
TU864805 other upstream 552520 90396922 ~ 90400472 (+) True G760718
TU864778 other upstream 563915 90374087 ~ 90389077 (+) False G760718
TU865569 other downstream 64459 91019538 ~ 91040568 (+) True G761280
TU865588 other downstream 146240 91101319 ~ 91104154 (+) False G761291
TU865584 other downstream 146490 91101569 ~ 91102632 (+) False G761291
TU865585 other downstream 146490 91101569 ~ 91103809 (+) False G761291
TU865587 other downstream 146490 91101569 ~ 91102632 (+) False G761291

Expression Profile