RNA id: TU865569


Basic Information

Item Value
RNA id TU865569
length 1348
RNA type TUCP
GC content 0.51
exon number 2
gene id G761280
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 91007569 ~ 91040568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgctttacagtccgccctcggcttctacagaccgccctcggctgctacagacctccctcggctgctacagaccgccctcggctgctacaatcctccctcagctgctacagactgccctcggctgctacagaccgccctcagctgctacagtcctccctcggctgctttacagtcctccctcggctgctacagaccgccctcggctgctacagatccccctcggctgctacagacccccctcggctgctacagaccgccctcggctgctacagtcctccctcagctgctacagaccgccctcggctgctacaatcctccctcggctgctacagacctccctcggctggtacagacctccctcggctgctacagaccgccctcggctgctacaatcctccctcggctgctacagacctccctcggctgctacagacctccctcggctgctacagaccgccctcagctgctacagtcctccctcggctgctttacagtcctccctcggctgctacagaccgccctcagctgctacagatccccctcggctgctacagttAAATGACTCTGAATTCCTTATTTTAGGAGATttgaactgggacatgcttacatCTGTATCGGACTCTTTTAAAGAACTGTGACTCTCTGAATCTCACTCAACTAATGCGCCTACAAGACCGAAACCCAGAGCACCTAACAAATCAATTGGACATTATTCTAAggaatacctctcacaaatacacatggactgggatattctgtagtgatgaaatacacatggactgggatattctgtagtgatgaaatacacatggactgggatattctgtagtgatgaaatacacatggactgggatattctgtaatgatgtcagtgatgaaatacaacagtttggggaaggccctttcctgtttcagcatgacaatgccccgtgcacaaagtgaggtccatacagaaaatgTTAGTCAAGATCAgtgttgaagaacttgactggcctgaccTCAACTCCAGGGAAGTTGAGgtcaaggtcttggagtggcctagccagtctccagacctgaacccaatagaaaatctttggagggagctgaaagtctgtattgcccagcgacagcccccaaacctgaaggatctggagaaggtctgtatggaggagtgggccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaacgtatgatctctgtaattgcaaacaaaggtttctgtaccaaatattaagttcagcttttctgatgtatcaaatacttatgtcatgcaataaaatgcaaattaattacttaaatatcatacaatgtgattttctggatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU865564 lncRNA upstream 22318 90996431 ~ 90997220 (+) True G761275
TU865553 lncRNA upstream 32249 90984294 ~ 90987289 (+) False G761268
TU865550 lncRNA upstream 32249 90984585 ~ 90987289 (+) True G761268
TU865513 lncRNA upstream 64399 90952992 ~ 90955139 (+) False G761244
TU865495 lncRNA upstream 64459 90952992 ~ 90955079 (+) False G761244
TU865607 lncRNA downstream 19484 91060052 ~ 91061991 (+) True G761300
TU865667 lncRNA downstream 149752 91190320 ~ 91201574 (+) True G761352
TU865699 lncRNA downstream 189024 91229592 ~ 91230793 (+) True G761375
TU865706 lncRNA downstream 202743 91243311 ~ 91244141 (+) True G761382
TU865709 lncRNA downstream 207682 91248250 ~ 91249100 (+) True G761385
XM_036986792.1 mRNA upstream 102801 90913773 ~ 90916737 (+) True LOC110530903
XM_036986791.1 mRNA upstream 189013 90799988 ~ 90830525 (+) True LOC110530865
XM_021614155.2 mRNA upstream 222600 90779252 ~ 90796938 (+) True LOC110530867
XR_005053010.1 mRNA upstream 233837 90779123 ~ 90785701 (+) False LOC110530867
XM_036986786.1 mRNA upstream 276454 90737231 ~ 90743084 (+) False ndufb3
XM_036986799.1 mRNA downstream 199318 91239886 ~ 91260968 (+) True rgs20
TU865504 other upstream 46975 90954264 ~ 90972563 (+) True G761244
TU865490 other upstream 58014 90954264 ~ 90961524 (+) False G761244
TU865515 other upstream 64399 90952992 ~ 90955139 (+) False G761244
TU865491 other upstream 64459 90952992 ~ 90955079 (+) False G761244
TU865499 other upstream 64459 90952992 ~ 90955079 (+) False G761244
TU865588 other downstream 60751 91101319 ~ 91104154 (+) False G761291
TU865584 other downstream 61001 91101569 ~ 91102632 (+) False G761291
TU865585 other downstream 61001 91101569 ~ 91103809 (+) False G761291
TU865587 other downstream 61001 91101569 ~ 91102632 (+) False G761291
TU865590 other downstream 61001 91101569 ~ 91103809 (+) False G761291

Expression Profile