RNA id: TU865754


Basic Information

Item Value
RNA id TU865754
length 4730
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G761418
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 91319818 ~ 91324653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGATATTTGGCTTTTAGTTTTATTGTGAATACCAATGAATAAGCATGGTTAAAATAGTAAATATTAAACAGCTGGGTACATTTAACAAAACCTTTACAACTATCATGTTTGAAAGGTAaacccatagagatcctattaaatgacAGTTAAACCAGGCATGAAGATTGATGCTACACTTTACTGTCAGTTGATCCAATGGGCTTTATATTCTCATAAGGTCTGTTACATGCTCCGAGTAGCAGGGATGTATAGACCAGAGCTAGGGGGCAGTAGAGAATGTAGTGACAGTATAGACCAGAGCTAGGGGGCAGTAGAGAATGTAGTGACAGCATGGACCAGAGCTAGGGGGTAGTAGATGATGTAGTGACAGTATGGACCAGAGCTAGGGGGAAGTAGAGAATGTAGTGACAGTATGGACCAGAGCTAGGGGGAAGTAGAGAATGTAGTGACATTGTGGACCAGAGCTAGGGGGCAGTAGAGGATGTAGTGACAACATGGACCACAGCTAGGGGGTAGTAGAGAATGTAGTGACAAAATGGACCAGAGCTAGGGGGTAGTAGATAATGTAGTGACAGTATAGACCAGAGCTAGGGGCAGTAGAGAACGTAGTGACAGTATGGATCAGAGCTAGGGGGAAGTAGAAGATAACACAGTAGACGACATTCCCCAGACTTGAAATGACAGGATTCTTTAGTTGTATAAACATAACCTTCATCCAGACCTATTGCTCGGTTCTACTTCAGATAAATACAGTCAGAGGCCAGTCTATAAGGGGTAGTTAAGGTTAGATAAATACATTGAGATGAACAGCAGCTCCTGGATCTAAAGGGTTAAAATGAGAGAACACTTCTTATGAGCTATTTAAATATAGACCTAAAATCAGGAAGGACATCACATTCATTTTCTATCATGACAAATTCTGTAAAGTACTGTGCATGTAAAATAGCATAACAATAATCAAATATAAATTAAAACgcacaataaaaaaaactatcaatTTAACACTGGCAAGAGAAGCTTAAAAAGATAACAGCAGAATTAGTCAGATCCCTGGAGGCAGATCTCAAATGGAaatctattccctacatagttcagTACTTTGGCCCGAGCTTCATAGGGCTGCCTCATAAGGCTCTGCTCTAGAGTAGTGTACTTCATGTCCCCAGGGACATGTGTTCACATGTCCAGGAGAGCAGGGGCAATTGCTGCTTGTTGTTTTGTtcgggaaacacaaacacaccccatcAGACCTGGACAGAAACACTCAGGACACTATATAATATTACTAATACATATACTATATCTCATTCACTAGTACATTATATTATACACACACTATCATATTACTAGCACAGTACATATCACGAGTACagtacacactacatatacaaaaaTATGCGGATACCCCTTCAAactagtggattcagctatttccgCCACACCCATTACTTACAGGTGTAgaaaaattgagcacacagccatgcactctcaatagacaaacattggcagtagaacggccttactgaatagctcagtgactttcaacgtagcacTGTCATAGGACgccacatttccaacaagtcactTCCTCAAATTTctcccctgctagagctgccccggtcaactgtaagtggtgTTAGTGTGacgtggaaacttctaggagcaaaaacagctgcccgaatgcatagtgtcaactgaaAAGTtggttggaggaggaataatggttcgGGCTCcttcgttccagtgaagggaaatcaacgctgcagcatacaatgacattctagacgattctgtgcttccaactttgtggcaacagtttggggaaggcgctttcatgtttcagcatgacaatgcccccgtggataaagcaaggtccatacagaaaaggtttgtcgagaacggtgtggaagaacttgactggcctgcacagagccctgacctcaaacccatcgaacacttttgggattaattggaaccccgactgtgagccaggcctaatcacccaacatcagtgccaacCTCAATAatgcgcttgtggctgaatggaagcaagtcccctcagcaatgttccaacatctagtggaaagccagaagagtggaggctgttattgcagcaaacgggggaccaactccatattaatgcccatgagcttggaatgagatgtttgagggaacaggtgtccacatactttaggtcatgtagtgtgtatgtatgcatgtatatatttttactgCACTAGTCATAtgatatagtacagtacatatgtactgtactatatcaTATGACTAGTTCAGTATGTGTCACCAGCACAGAATATATGTACTATAATATATCATatgactagtacagtatataatcaccagtactgtatatatgtactaTATCATATGACTAGTATAGTATATAGAACCAGTAGAGTATAAATGTACTAGACCTTTTCATATGGCTAGTACAGCATGTCTCACCAGTACaataaacagtgcattcggaaagtattcagaccttcacttttttcacattttgttgttacaacctTTTTATAAAACagattacatattttttttcttttttacacacaataccccctaatgacaaagaaaaaacggtgtattcagactctttactcagtactttgttgaagcacttacagcattgattacagcctcaagtgttcttgggtatgactctacaagcttggcatacatgtatttggggagtttatcccattcttctctgcagatcctctcaatcactcaaggacattcagagacttgccttgaagccactcctgcgtcgttttggctgtgtgcttagggtcattgtcctggaggaaggtgaaccttcgccccagtctgaggaccagagcactctggagcaggttttcatctctgtactttactccattcatcttttcctcgatcctgactagtctcccagtccctgctgcatggtgccaggtttcctccagatgtgacgcttggcattcaggcaaagagttcaatcttggtttcatcggaccagaaaatcttgtttatcatggtctgagagtccttttggcaaattccaagcgggctgtcattttACTGAGTGGCTTCGGTCCGGcaactctactataaaggcctgattggtggagtgctgcagagacagttgtttttctggaaggttctcccatctccacagaggaactctggagctctgtcagagtgaccattgggcacttctccccgattgctcagtttggccggtcagccagctctaggaattcttggtggttccaaacttcttccatttaaaaatggaggccactgtgttcttggggatcttcaatgctgccgaaatgttttggtacccttccccagatctgtgtctcaacacaatcctgtctcagagtttcacagacaattccttccacctcatggcttggtttctgctctgacatgcactgtcaactgtgggaccattatatagacaggtgtgtgcattttccaaatcatggccaatcaattgtatttggactccaatgaagttgtcgaaacatcaaggatgatcaattgaaacaggatgcacctgagctcaatttcgagtctcatagcaaaaggtctgaatacttatgtaaataaggtatctttaaaaaaacatttttttataaaattctctaaaaacctgtttatgccttgtcattatggggtgtgtgtagattgatgaggggaaaaagtaattaatcaattttagaataaggctgtaacaaaatgtggaaaatgtcagggggcctgaatactttccgaatgcactgtagtacatcaccagtacagtacaTTTAAACAATGTCTGCCTGTTTCACTATTTTCTCATCTTTAGTATTTCTAAAACGATGCAACGACAAGAAAGAATGAAGTAGCATAACATTGTCAGTTTCCTTTAAAAAAGAAAAGTTAAACAAGTTGCTGCTTCTCTTCATGATGTGGAACATCACTGTCTGTTCATATGCTGGACGGGCTTCATGGTTCTGCTCTTttagggtgagagagagtgagtgcgaGAGAGAtgaaatgacagagagagagagatgaaatggCAGAGTATGCAGAATGTGTCCATGTCTACTTGTGTATCTGTAAATGTGTACCTGTATGTGTaatttgtagtgtttgtgtggcGTGTGTAGTGTGGGTGTGTATTTTGCAGTGTGGCATGTGTATTTTGCAGTGTGGGTGTGTGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTGCAGTGTGGGCGTGTGTAGTTTTGCAGTGTGGGCGTGTGTAGTTTTGCAGTGTGGGTGTGTGGCGAGTGTAGTTTGCAGTGTGGCGTGTGTAGTGTGGGTGTGTAGTAGGCAGTGCGGGTGTGTGGCGTGTGTAGTTTGCAGTGCGGGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGCGCGTGTGTAGTTTGCAGTGTGGCGTGTGTAGTTTGCAGTGTGGCGTGTGTAGTTTGCAGTGTGGCGTGTGTAGTTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU865634 lncRNA upstream 46904 91270381 ~ 91272914 (+) False G761324
TU865635 lncRNA upstream 46904 91270381 ~ 91272914 (+) False G761324
TU865636 lncRNA upstream 46904 91270381 ~ 91272914 (+) False G761324
TU865637 lncRNA upstream 46904 91270381 ~ 91272914 (+) True G761324
TU865713 lncRNA upstream 66580 91252882 ~ 91253238 (+) True G761388
TU866060 lncRNA downstream 47777 91372430 ~ 91372670 (+) True G761648
TU866066 lncRNA downstream 52684 91377337 ~ 91378272 (+) True G761654
TU866068 lncRNA downstream 53693 91378346 ~ 91378575 (+) True G761656
TU866080 lncRNA downstream 147794 91472447 ~ 91472687 (+) True G761666
TU866081 lncRNA downstream 148938 91473591 ~ 91473794 (+) True G761667
XM_036986799.1 mRNA upstream 58850 91239886 ~ 91260968 (+) True rgs20
XM_036986792.1 mRNA upstream 403081 90913773 ~ 90916737 (+) True LOC110530903
XM_036986791.1 mRNA upstream 489293 90799988 ~ 90830525 (+) True LOC110530865
XM_021614155.2 mRNA upstream 522880 90779252 ~ 90796938 (+) True LOC110530867
XR_005053010.1 mRNA upstream 534117 90779123 ~ 90785701 (+) False LOC110530867
TU865588 other upstream 215664 91101319 ~ 91104154 (+) False G761291
TU865585 other upstream 216009 91101569 ~ 91103809 (+) False G761291
TU865590 other upstream 216009 91101569 ~ 91103809 (+) False G761291
TU865591 other upstream 216009 91101569 ~ 91103809 (+) False G761291
TU865596 other upstream 216009 91101569 ~ 91103809 (+) True G761291
TU866166 other downstream 239420 91564073 ~ 91567098 (+) False G761750

Expression Profile