RNA id: XR_005053092.1


Basic Information

Item Value
RNA id XR_005053092.1
length 2078
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110531328
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 2813395 ~ 2824097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCCTCCACTGAAATCAGTTCACCTTCAAAGGCAGAAACTTTTCTTTTCTTTGAGACACCATCATCTAAAGCCAACATGAAGCGGCTACTGctgctctgcctgtgtgtctACGCTGTGCGTTGTCAAGACGATTATGACGAATATGACCTGGGGGACAAAACAGATCCCAAAAAAGTGGTAGACCCTCGCGGCCACCGTCCCTTGTCCAGAGGGAGTGAGACCTACTCCCCCGTCCGCAACAACCCCCCTCCCGTCAGCGGTGGCAGCCAATACCGTGGGCGACCTACGGCGGCTCCCGCCAGAGGCGTGGCGGCGCAGGAGAAGGATGAGCAACCGGAGGCTGGAGGGTGTACACATGCCTCAGAACAAATGGGGGTGCTGTGTCCTACCGGCTGTGAGCTGAAGACGGCCATGCTGAAACAAGAGAGGAACGTGAAAGATGAAGTGAAGAGGATGCAGAAAGATGTTGACGACCTGTCGAGATCCTCTAACACCATCTATAACTACGTAGATGGCATGTCCTCAgcgctgagagagagacaactagtCAGCAACgaGAATGGTGATCTGGTGAGTCAGTACACGGACAGTCTGGAGTCCCAGCATGCCTTTGCAAAGGAGGCTATAGACACAGTCTTCCCTTCTAACattagGATTCTTCAAGGGGTCCTTGAGAAGATCCGGTTGAAGATTCAGAGAGTGGAGAAGGCTATCCTGGCCCAGAGGGAAGAATGCAAGGAGCCGTGCACTGTCTCCTGCCCCATTCCTGTTGTCTCTGgtaagGAGTGTGAGGACATCTTCAGGAAAGGAGGAAGGGATTCTGGGATGTATCTGATCCAGCCTGACTCCTTCTACCAGCCCTACAAGGTCTACTGTGACCAGACCACACAGAAAGGAGgctggACCACTATTCAGAACAGGAAGGATGGTTCTGTAGACTTTGGCCGGCGTTGGGACAACTACCGCAGTGGTTTCGGAAACATCGCCTTCGACGTCGGAAAGGGATATTGCAACACTCCAGGGGAGTACTGGCTGGGTAACGACCGCATCAGTCAGCTGACCAAGCAGGGACCCACTGAGGTCCTCATGGAGATGGAGGATTGGTCTGGCAACAAGGTCCACGCCCAGTACAGaaagtttactatacagGGCGAGACGTCCAACTACATATTGGCGATCGATGGGTATTCAGGAACAGCCGGTAACGTGATGCTGGACGGAGCTACGATGCTGATTGGAGAGAACCGGACCATGACCATCCACAATGGAATGATGTTCAGCACCTACGACAGAGACAACGATAACTGGACTCCAGGCGATCCATCCAAGCAGTGCTCCCGTGAGGACGGCGGTGGTTGGTGGTACAACAGGTGTCACTCAGCCAATCCAAACGGCCGTTACTACTGGGGCGGGACTTACACGCGGTACATGGCAAAACACGGCACAGATGACGGCATGGTGTGGATGAACTGGAAGGGATCCTGGTACTCTCTCAAAGCCATCTGCATGAAGATCAGGCCCTACTTCGCCTCGCGgtagacacacacagggacacacagggacaagcacagagacacacacagacacacacagagagacacacacagacacaccgagaGACACAGGAAGGGACCTTTAGCTGAATCAGGTCAAAAACAAAGGTTTGCACCCCTTTCGGTACCCAGGACGATTCAACTCTGACCCGTAGCTGactttctgttctacctgataattaactgCACCCACCTGGtagtcccaggtctaaatcagcccctgATTTAGAGCGGAACACTGAAAACAAGGTACTGGCTTGGAGGCTCTCTATGTTCGTACTGTATGTGAGAGCCAACAGAGAGCACCAATGTGTCATAATCATAATCTGATCGAAATCTCTGAAACACTAAAGGAAACGTATAATGACTTCAATAGgggctttttttttaaagaaactacAGAGGAACAAATGGTGCATGAcgcaagagaaaaagagagaaaagggatgTTGTTGTTTCAAACCTGAACCTGATGTcttaattataattttttttataagGTTGAACAGAGAAAAGTCAAGT

Function

GO: NA

KEGG:

id description
K03904 FGB; fibrinogen beta chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU868911 lncRNA downstream 2855 2809239 ~ 2810641 (-) False G763800
TU868909 lncRNA downstream 3519 2809358 ~ 2809977 (-) True G763800
TU868263 lncRNA downstream 9635 2800621 ~ 2803861 (-) True G763320
TU868876 lncRNA downstream 135484 2667692 ~ 2678012 (-) True G763773
TU868872 lncRNA downstream 165711 2638047 ~ 2647785 (-) False G763773
TU868931 lncRNA upstream 5279 2829376 ~ 2829607 (-) True G763815
TU868932 lncRNA upstream 6055 2830152 ~ 2830510 (-) True G763816
TU868933 lncRNA upstream 11793 2835890 ~ 2836416 (-) False G763817
TU868934 lncRNA upstream 11793 2835890 ~ 2836542 (-) True G763817
TU868942 lncRNA upstream 29888 2853985 ~ 2855412 (-) True G763825
XM_036987040.1 mRNA downstream 25059 2727465 ~ 2788437 (-) True LOC110518027
XM_036987037.1 mRNA downstream 132861 2612467 ~ 2680635 (-) False LOC110519362
XM_036987039.1 mRNA downstream 132861 2612467 ~ 2680635 (-) False LOC110519362
XM_036987038.1 mRNA downstream 132861 2612468 ~ 2680635 (-) True LOC110519362
NM_001165147.1 mRNA downstream 444019 2357311 ~ 2369477 (-) True mog
XM_021614538.2 mRNA upstream 34662 2858759 ~ 2861355 (-) False LOC110531335
XM_036987047.1 mRNA upstream 34663 2858760 ~ 2861089 (-) False LOC110531335
XM_036987048.1 mRNA upstream 34663 2858760 ~ 2861089 (-) True LOC110531335
XM_021614540.2 mRNA upstream 46670 2870767 ~ 2875052 (-) False LOC110531336
XM_036987050.1 mRNA upstream 46670 2870767 ~ 2875089 (-) True LOC110531336
TU868794 other downstream 326595 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 326595 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 835265 1962973 ~ 1978231 (-) False G763587
TU867065 other downstream 1947064 861374 ~ 866432 (-) False G762459
TU869128 other upstream 472205 3296302 ~ 3299103 (-) True G763961
TU869858 other upstream 1027874 3851971 ~ 3858893 (-) False LOC110498423
TU870731 other upstream 1189737 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 1189737 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 1466698 4290795 ~ 4319826 (-) True G765059

Expression Profile