RNA id: XR_005053098.1



Basic Information


Item Value
RNA id XR_005053098.1
length 950
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118965970
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3812931 ~ 3813910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtgtgtgtgtgtgtgtgtgtcagtcaccaaatctcaacccaattgaacactaaTGGAACGTTGCtggcgttttccaccaccataaaAAAGGAATGTATCTGGGAAGACCAGTTTCATCCTCCACTTGAGTTCCCTTGGAGAACCgatgccaaggcacattgaagctgtccTGGTCGGCTCATGGTGGCCCAATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAATGGTTGGCCCAATTAAAGGGAAGGTTTAATGGTTGGCCCAATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAATGGTTGGCCCAATTAAAGGGAAGGTTTAATGGTTGGCCCCAATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAATGGTTGGCCCCAATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAATGGTTGGCCCTATTAAAGGGAAGGTTTAAAGGGTAGGTAGCATACAAGGGAGCCACATGTAACATACGGTTTCGCATCAAATGTCCCAAAGTTACACCTCACTATTCTATTATTCTTCGTGGGAAATAAACGAAACAATGTCGAAGTCATGTTCGGTAAAAAATGGAGGACCCGGCAAGGCCTTTTCCCTATAACTGTAAACACCAACAGAAGTTTGACTTCGAATGTAAAACTTGATAATTAAAACCAAAAGTGTTTGCACTCGTGACTCTACTGGTTTCCAATTGCATTTCCTGCCAAACCTACAGTTAGGTAGATAGATTCCAGATGTCAGCAAAGTACTAAGCCAAGGTGGAAAAAGTTGCAAAACTCCCGTAGCCTACTTCAGAGAAAATGCTGAGAAggttccccccccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU869923 lncRNA downstream 17376 3794237 ~ 3795555 (-) True G764457
TU869922 lncRNA downstream 20714 3791771 ~ 3792217 (-) True G764456
TU869856 lncRNA downstream 24089 3786746 ~ 3788842 (-) True LOC110532885
TU869905 lncRNA downstream 31252 3752430 ~ 3781679 (-) False G764439
TU869932 lncRNA upstream 4688 3818598 ~ 3820791 (-) False G764463
TU869931 lncRNA upstream 4890 3818800 ~ 3820791 (-) False G764463
TU869933 lncRNA upstream 4890 3818800 ~ 3820791 (-) True G764463
TU869939 lncRNA upstream 18376 3832286 ~ 3832696 (-) True G764469
TU869942 lncRNA upstream 22471 3836381 ~ 3836831 (-) True G764472
XM_036989231.1 mRNA downstream 73234 3737529 ~ 3739697 (-) False LOC118966150
XM_036987089.1 mRNA downstream 113924 3667268 ~ 3699007 (-) False ttc29
XM_036987090.1 mRNA downstream 113924 3667268 ~ 3699007 (-) True ttc29
XM_036987087.1 mRNA downstream 149359 3636138 ~ 3663572 (-) True slc10a7
XM_036987088.1 mRNA downstream 149360 3636138 ~ 3663571 (-) False slc10a7
XM_036987099.1 mRNA upstream 37942 3851852 ~ 3884320 (-) False LOC110498423
XM_036987097.1 mRNA upstream 37942 3851852 ~ 3901549 (-) False LOC110498423
XM_036987098.1 mRNA upstream 37942 3851852 ~ 3901549 (-) False LOC110498423
XM_036987103.1 mRNA upstream 89211 3903121 ~ 3917056 (-) False LOC110498424
XM_036987100.1 mRNA upstream 89211 3903121 ~ 3946551 (-) False LOC110498424
TU869128 other downstream 513828 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1326030 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 1326030 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 1834700 1962973 ~ 1978231 (-) False G763587
TU867066 other downstream 2947819 861374 ~ 865112 (-) False G762459
TU869858 other upstream 38061 3851971 ~ 3858893 (-) False LOC110498423
TU870731 other upstream 199924 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 199924 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 476885 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 632417 4446327 ~ 4536079 (-) False G765100

Expression Profile