RNA id: XM_036987098.1


Basic Information

Item Value
RNA id XM_036987098.1
length 2982
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110498423
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3851852 ~ 3901549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGTGACCCCGACCTGACGTCATCACAGCACGCCAACCCGTTTGGGTTTCTCTTGCAGAAGATAAAAGAGACTGAAAAGTGCCTCTTTCTCCGACCTATACGAGCGTTTTATGTTTCTCTGTAGACTCCATGCCCCTTCGCCGTCTGATGAACGGATGTTAGCGTATTTTACGGGGGGGGAAAAGGGGCCAAAATCAGATTTATTTCGAGTGCAAAGACTGGATAAAACGCCACTGTACTTGCAACAACGGCCATCTGTTTTCGGTGAAGGATGCCCCAGCCCTCTTCTCCCATCTGAAGACGGTAGGACAGTAGTCTGGAGATGAAACAGGATCCATTGACCAAGGGTGGTAACACCGCCACATCCTGTCCAGGAAGGATAGACTCTATTGGGGTAATGATGCTAGCCAGCAccccctcctccacttcctccctctcttcctccatctcttcttcatCCTCCTTGCAGGGAGAAAATAGAAAGGGAGATGAGGAGTTCATTTGTcgagaggaggaagaaggggaggtggTCAGCGTTGCTATAGTGACCATAGCGGAGGAGTCCTGCCCTTCCGAACCGTTTGGAACCGTCGCCCACGGGGAGGTAGCAGCCAATGAGAGTGGGGTGAGGGATGGAGACTGCCAATCAAAAACTAACCAAAGTACACAAACTGAAGAAGAGGAGAAGCatgaggagggggaaggaggagaggagggtgtaaaagagaaagaggaggaggaggaagaagagatggCTGAAGATCAGAGTGACCAATCTGccctgttggaggaggaggaggaggaggatgatgagggaaGGAACCAGGTGTTTGTCTCTGATGATAACTTGGGGTTGTCGGACAGTCTGACCCCTGGAAAACCAACACTCCTCAACGTCAAGaTGAAGAGGAAGTTGGACCATGGACCAGACGTCAGGCCGTTCTCTTCAGTTAAGAAGCACTGCAAAGGTTCCAGCTACCTCAGtcccTGCAGTCTCGTTCCATTCCAGACCACGCCCACCACCTTTGGAGACCTGCGAGCAGCCAATGGGCATTCCGCTCAGCGGAGACGTGTCACCTCAGGCCCGCCCCCCTCCGGCCTACAGGACTGGCTTCACACCTTCCAGGCGTGGAGTGGTCCTGAGCGCCTATTGGCTCTGGATGACTTGATTGACAGCTGTGAGTCCAATCAGGTGAAGCACATGATGCAGGTTATTGAGCCTCAGTTCCAACGAGACTTCATCTCCCTGCTGCCCAAAGagttggccctgtatGTCCTGACGTTCCTGGAGCCCAGAGATCTGATGCATGCTGCTCAGACCTGTTCCTATTGGAGGATACTGGCTGAGGATAACCTGCTGTGGAGGGAGAAGTGTAGGGAGGAGGGTATAGAAGAATGCCTGGTTGTTCAGAGGAGGAAGACTCTAAAACCTGGGTTCCTCCACTCCCCCTGGAAGAGTGCCTACGTACAACAACACCGGATAGAGAGcaactggaggactggagataTCACCTCACCTAAGgtCCTGAAGGGTCACGATGATCATGTGATCACATGTCTGCAGTTCTGTGGTGACCTCATCGTCAGTGGATCTGATGACAACACTCTGAAAGTCTGGTCTGCCCTGACCAGCAAGtgtCTGCGTACATTAGTAGGCCATACAGGAGGTGTGTGGTCCAGTCAGATGAGTGGTAACATCGTGATCAGTGGGTCGACAGACAGGACTCTGAAGGTTTGGGACGCAGAGAGCGGAGAGTGTGTTCACACCCTGTACGGACATACCTCTACTGTACGCTGTATACACCTGCATGACAAACAgGTTGTGAGCGGTAGCCGTGACGCTACGCTGCGTCTGTGGGACGTAGATTCTGGCGAGTGTCTCCATGTCCTGACAGGTCATGTGGCGGCGGTGCGGTGTGTCCAGTATGACGGGCGCAGGGTGGTCAGCGGAGGATACGACTTCATGGTTAAAGTCTGGGACCCGGAGACAGAGACCTGTCTACACACTCTGCAGGGACACACTAACAGAGTCTATTCTCTTCagtTTGACGGTGCCTACGTGGTCAGTGGATCTCTGGACACCTCCATCAGAGTATGGGACGTAGTGACGGGAGGGTGTGTCCACACGCTGACCGGCCACCAATCACTGACCAGTGGTATGGAACTAAAGAACAACATCCTGGTCTCTGGCAACGCTGACTCTACTGTCAGGGTCTGGGATATACGGACTGGACAGTGTCTCCACACactgcaaggtCCCCATAAGCACCAGTCAGCAGTGACCTGTCTCCAGTTCTCTCGCTCCCTGGTGGTCTCCTCATCAGATGACGGGACAGTGAAGCTGTGGAGCCTGGCGACGGGGGAGTGGATCAGAGACCTGGTGGCTCTGCAGAGTGGAGGATCAGGGGGAGTGGTGTGGAGGATCAGggcatctaacaccagactggtagcAGCTGTTGGCAGCAGGAACGGAACAGAGGAGACTAAACTCTTGGTGCTGGACTTTGACCTCACTGACACCCAGAAGTGATGTCATTTAAAATGGACATTATGTCATCGGGAAAGGATGCGATGTCATTGGATAAGGATGTGAGGCAATCAAAGAAGGACCCAATATCGTCATATGGGAACGGAAAGCTTGTGGTGacgaggaggaggtgtgaggaggaggaggtggtgaggaGGAGGTGAAGTATGGAAGGACTGAGTGCAACTCCAAAATGTCCTCTTTCCTCATCACAACCGTGGGCAACCAAACCCCCGTATTTTCTGTCTGAACTAAAACACTGGTACTGACTGGTGAAGAGACACAAGATCAACTTTCTGTGACTGGAAGAAACCACGAGAGGACTCACTGGCCAAACGACTGACCGGCTGGCTGGCTGACCGGCTGACCGGCTGGCTGAccgactggctgactggctggccgactgactggctgactggctggctgactggctggctggccgactgactgactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU869942 lncRNA downstream 15021 3836381 ~ 3836831 (-) True G764472
TU869939 lncRNA downstream 19156 3832286 ~ 3832696 (-) True G764469
TU869932 lncRNA downstream 31061 3818598 ~ 3820791 (-) False G764463
TU869931 lncRNA downstream 31061 3818800 ~ 3820791 (-) False G764463
TU869933 lncRNA downstream 31061 3818800 ~ 3820791 (-) True G764463
TU869951 lncRNA upstream 1532 3903081 ~ 3903861 (-) False LOC110498424
TU869952 lncRNA upstream 1991 3903540 ~ 3903861 (-) False LOC110498424
TU869960 lncRNA upstream 15205 3916754 ~ 3917027 (-) True LOC110498424
TU869963 lncRNA upstream 17822 3919371 ~ 3920707 (-) False G764491
TU869964 lncRNA upstream 18419 3919968 ~ 3920707 (-) True G764491
XR_005053096.1 mRNA downstream 11972 3793492 ~ 3839880 (-) False LOC110532885
XM_036987095.1 mRNA downstream 11975 3786932 ~ 3839877 (-) False LOC110532885
XM_036987096.1 mRNA downstream 11975 3786932 ~ 3839877 (-) False LOC110532885
XR_005053098.1 mRNA downstream 37942 3812931 ~ 3813910 (-) True LOC118965970
XM_036989231.1 mRNA downstream 112155 3737529 ~ 3739697 (-) False LOC118966150
XM_036987103.1 mRNA upstream 1572 3903121 ~ 3917056 (-) False LOC110498424
XM_036987100.1 mRNA upstream 1572 3903121 ~ 3946551 (-) False LOC110498424
XM_036987102.1 mRNA upstream 1572 3903121 ~ 3946551 (-) False LOC110498424
XM_036987104.1 mRNA upstream 47519 3949068 ~ 3967323 (-) False LOC110513230
XR_005053099.1 mRNA upstream 47519 3949068 ~ 3967323 (-) False LOC110513230
TU869128 other downstream 552749 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1364951 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 1364951 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 1873621 1962973 ~ 1978231 (-) False G763587
TU867066 other downstream 2986740 861374 ~ 865112 (-) False G762459
TU870731 other upstream 112285 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 112285 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 389246 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 544778 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 565018 4466567 ~ 4467708 (-) True G765100

Expression Profile