RNA id: XR_005053101.1


Basic Information

Item Value
RNA id XR_005053101.1
length 4582
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110513230
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3947831 ~ 3967328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTTGCGCACAGCAAGGTAGAAATACTTCCGGGATTTGAATGTAGTTTTGATACTTTGTTTTACATTTCCGGTTTTCAGAAAAGTTCCAATTGTACTTTTGTCCCAAAGTCTCTAATAGTTTCCTGGCGCAGTTTTACATTGATCTAGAGATTAAATCCAAAGAAAACGGACGAAGAAATACATCTGAAAGAAATAGAAGAAAGGTAGGatgatggtggaggtggagaacCAGAGAGGGGAGACCCTCATACCCAGCGAGGGAGAGGGGTCTGGTGGACAGGAGGCCATCCACATGAAGGAGTCCGTTGTCGAGGACAACACAGAACCCGATGAGGGTCCACGGAAGCCAACCACAGGACCAGTGGTTGTCACGGGAAACCAGAAAATGCCCGCCATTGAGAAACTGGACCAGGTTCGCAAATGGAGCATCACTACTTAtaagtgtACTAAGCAGGTTCTGTCAGAGAAGATGGGTCGTGGATCCCGTACGGTCGACCCAGAACTCGAGGCCCGCATCGACATTCTCCGTGATGACCGCCGTCGTTATGATCACGTGACCTGCCTGGCCCAGACACTCGCCACGCAGCTCGCCCAGGTCACACAGACGCAAAGGACTCTGGGCGATGCCTTCACCGAGCTCAGCCTCAAAACGCCGCCACTACACGTAGAGTTTGGTCTGAACGGGGACACCCAGCGGTTCCTGTCGAAGAGCGGAGAGGTCATGGTCTCGGCTATGAACTCTTTCACCTCCGATATGAACACACTGATTAACAAAACTATAGAAGACACCATGGTTAACGTGAAACACTACGAGAcagccagGATAGAGTACGATGCGTACCGTTGTGACCTGGAGGACTTGAACCTGGGACCTCGAGACACCGCCACCCTCCCCAAACTAGAGCAGGCccagagaaccttccagaaccagagagagaagtATGAGAAGAGCCGAAACGACCTGTCAGTCAAACTCAAACTACTGGAGGAGAATAAGgtaAAGGTTCTCCAGCATCAGTTGGTATTGTTCCATGGTGCTGTAGCCTCCAACAGCACCTCCAACCACCAGCACCTGGAGCTCAGCTTGCAGCAGGCAAGCACCAAGCTACCCATGCCCGGCACGGAGCCTCCTTCCTGGCTAGAGGAGAGCTCATCACCCCAATGACCATCCACCATATCTGGGGGTCCATGAAACTTTCCAGTATCTTAATGCAAGTTGGGGCCTCTCAACTGCCACATCTGTGGGCCAAAACAGAGGGTATTGTCGACACTCCTGTTCTCTTATCCTATAGATCCTATAGGTTCTTCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTAACCTATAGGTTCTCCTCTTACCATATAGGTTCTTCTCTTACCCTATATGTCCTATAGGTTCTTCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCCGTAGAACCTCTAGGTTCTCTTCTTACCATATAGGTCCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTTCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTGTAGGACCTCTAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTGTAGAACCTCTAGGTTCTCTTCTTACCATATAGGTCCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGGTTCTTCTCTTACCCTATAGGTTATTCTCTTACCCTATAGGTCATATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGGTCCTCATCTTAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTACAGATTATCCTCTTACCCTATAGATCCTATAGGTTCTCATCTTACCCTATAGGTCCTCCTCTTACCCTATAGATCCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTTCTCTTACCCTATAGGTTATTCTCTTACCCTATAGGTCCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGGTCCTCATCTTAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTACAGATTATCCTCTTACCCTATAGATCCTATAGGTTCTCATCTTACCCTATAGGTCCTCCTCTTACCCTATAGATCCTATAGGTTCTCCTCTTACCCTATAGGTTCTTCTCTTACCCTATATGTTCTTCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTTCTCTTACCCTATAGGTTATTCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTATCCTCTTACCCTATAGAACCTATAGGTTATCCTCTTACCCTATAGGTTCTTCTCTTACCCTATATTTCCTATAGGTTCTTCTCTTACCCTATATGTCCTATAGGTTCTTCTCTTACCCTATAGGTCCTATAGGTTCTCCTCTTACCCTATAGGTCCTATAGGTTCATCTCTTACCCTATATGTCCTATAGGTTCTTCTCCTACCCTATAGGTTCGTCTCTTACCCTATAGGTCCTATAGGTTCTCCTCTTACCCTATAGGTCCTCATCTTAGGTTCTCCTCTTACCCTATAGAACCTAGAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTACAGATTATCCTCTTACCCTACAGATCCTATAGGTTCTCATCTTACCCTATAGGTCCTCCTCTTACCCTATAGATCCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGATTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTTCTCTTACCCTATAGGTTCTTCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTCTCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTATCCTCTTACCCTATAGAACCTATATTTTCTCCTCTTACCCTATAGGTTCTTCTCTTACCCTATATTTCCTATAGGTTCTTCTCTTACCCTATATGTCCTATAGATTCTTCTCTTACCCTATAGGTCCTATAGGTTCTCCTCTTACCCTATAGGTCCTATAGGTTCTCCTCTTACCCTATAGGACCTCTAGGTTATCCTCTTACCCTATAGGTCCTCATCTTAGGTTCTCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGGTCCTCATCTTAGGTTATCCTCTTACCCTATAGAACCTATAGGTTCTCCTCTTACCCTATAGGTTTTCCTCTTACCCTACAGATTATCCTCTTACCCTATAGATCCTATAGGTTATCCTCTTACCCTATAGGTTCTCCTCTTACCCTATAGGTTCTCCTTCTACCCTTCTCTTCCTGTAATACCTCTCACTCTGTTTCACCTACTTGTATACAGTGTTGTGACCTGACTATAGACTGTTGTTCACTCTGTTTCTGCTACTTGACTATAGACTGTtgttcactctgtttctcctacTTGACTATAGACTGTtgttcactctgtttctcctacTTGACTATAGACTGTTGTTCACTCTGTTTCTTCTACTTGACTATAGACTGTTGTTCACTCTGTTTCTTCTACTTGACTATAGACTGTTGTTCACTCTGTTTCTTCTACTTGACTATAGACTGTTGTTCACTCTGTTTATCCTACTTGTATACAGTGGTGTGACCTGACTATATAGACTGTtgttcactctgtttctcctacTTGACTATAGACTGTtgttcactctgtttctcctatTCACTGCCTGTATAGGAGTTCTGTTTGGCAGTAGCATTGTTACTATCACAGCATTTCTGTTTATTATTATGTATACAGCATGTACAGTTCTCCTGTATTGACTAATGCTGTGTCCAAAATGTCACCCTGTTCACTACGTCGTTCACTACCTTTGGAGCTCTATAAAGGGAGGTGCGTAGCATGTGGGGACGCAGCCTACAACTAAAGGACCAAACTAACGTGCGGTGCTGAGACGTGGAACCAAAGCCAGAGACCGTAGAATGTTCGAGACCGTTAGAACCTTTGACACTCTAGAACCTTCTTGGACTTTTTTTTAAGGATCTTTTAGATTCCTACCAGAATCAactatactgagcaaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU869970 lncRNA downstream 10948 3937915 ~ 3938120 (-) True G764497
TU869969 lncRNA downstream 14260 3934470 ~ 3934808 (-) True G764496
TU869966 lncRNA downstream 27015 3921805 ~ 3922053 (-) True G764493
TU869963 lncRNA downstream 28361 3919371 ~ 3920707 (-) False G764491
TU870707 lncRNA upstream 24409 3991732 ~ 3994954 (-) True G764962
TU870712 lncRNA upstream 25944 3993267 ~ 3998393 (-) True G764964
TU870717 lncRNA upstream 80393 4047716 ~ 4049499 (-) True G764966
TU870718 lncRNA upstream 81285 4048608 ~ 4056796 (-) True G764967
TU870716 lncRNA upstream 87746 4055069 ~ 4063234 (-) True G764965
XM_036987100.1 mRNA downstream 2517 3903121 ~ 3946551 (-) False LOC110498424
XM_036987102.1 mRNA downstream 2517 3903121 ~ 3946551 (-) False LOC110498424
XM_036987103.1 mRNA downstream 32012 3903121 ~ 3917056 (-) False LOC110498424
XM_036987097.1 mRNA downstream 47519 3851852 ~ 3901549 (-) False LOC110498423
XM_036989232.1 mRNA upstream 44829 4012152 ~ 4033537 (-) False LOC118966151
XM_036987116.1 mRNA upstream 75807 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA upstream 75807 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA upstream 75807 4043130 ~ 4183512 (-) True LOC110531315
XM_036987124.1 mRNA upstream 376171 4343494 ~ 4357228 (-) False LOC110515469
TU869858 other downstream 90175 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 649965 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1462167 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 1462167 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 1970837 1962973 ~ 1978231 (-) False G763587
TU870731 other upstream 46511 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 46511 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 323472 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 479004 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 499244 4466567 ~ 4467708 (-) True G765100

Expression Profile