RNA id: TU870688


Basic Information

Item Value
RNA id TU870688
length 1647
lncRNA type read_through
GC content 0.40
exon number 2
gene id LOC110513230
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3947831 ~ 3967328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTATATAGACTGTtgttcactctgtttctcctacTTGACTATAGACTGTtgttcactctgtttctcctatTCACTGCCTGTATAGGAGTTCTGTTTGGCAGTAGCATTGTTACTATCACAGCATTTCTGTTTATTATTATGTATACAGCATGTACAGTTCTCCTGTATTGACTAATGCTGTGTCCAAAATGTCACCCTGTTCACTACGTCGTTCACTACCTTTGGAGCTCTATAAAGGGAGGTGCGTAGCATGTGGGGACGCAGCCTACAACTAAAGGACCAAACTAACGTGCGGTGCTGAGACGTGGAACCAAAGCCAGAGACCGTAGAATGTTCGAGACCGTTAGAACCTTTGACACTCTAGAACCTTCTTGGACTTTTTTTTAAGGATCTTTTAGATTCCTACCAGAATCAactatactgagcaaaaatatttaaaaaatacgcacaaaacaatttcaaagattttaccgaGTTGCAATTCATATAAAGGAAATCAGTCGAtgtaaatcaattcattaggtcgctaatctatggatttcacatgactgtacaGGGGTGCAGCtgtggagggcataggcccacagaaatactcctcagcaccccccctGCAGGTGATGAAGCCAGATGTGAGGTCCTGGGTTgtcgtggttacatgtggtctgcagttgtgaggcgaggccggttggatgtactgccaaattatctaaaacgacattggaggtggcttatagtagagaaatgaacattcaattatctggcaacaactatggtggacattcctgctatcaacatgccaattgcactctccttcagcttgagacatctgtagcatttttagagtggccttttattgtccccggcacaaggtgcacctatgtactgatcatgctgtttttaatcagattcttgattatgccacacctgtcaggtggatggattatcttgacaaaggagaaatactcactaacagggatgtaaacaaatttgtgcacaaaatttgggagaaataagctttttgtgcgtaaggaacatttcggggatcttttattttggCTCATGaaccatgggaccaacactttttccatgttgcgtttatatttttgttcggtgtattTCCAAACGCATCTTTTGCACTTGTCTATCTACCAAAAAATAACAATTGTGTAtaattgtgtgtttttttaataTAAACACAATTTAATGCCAAATATCGAGATCAACATTTATTCTTCGTGTATAATGTACGTGTTTTTGATTCTTTAAAATAGGAAATTCAAAAAAAAGCACATCTGAGTTATCTTCGTTGCAGGTGCGTGATAACAGTTGAATAAAACGAGACAAAAAGGAgaaacctgcacactgctcttTAAGCTTTACAAATCGACCTCCCGTCCAATCAGAGGCTGACACATATTACAGAGCAGTGAGCGGGTTTCCCTTTTCACATGGCACTTGCACATCGGAGTGGGCTTGTTGCAGGTGCGTGGGAATCATTTGTGGCGATTTTTAAAGAAAATGACTTGCACACACTGCTCTTGCCAGTGTTACTTTAGATTTGTTAAGCTTTTATGTATTGACCTGTCGGCTTTCCTCAGAGCTTTTGGTGTGTTTTTGAATCTTGCCCATTAAAATGTTTGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU869970 lncRNA downstream 9711 3937915 ~ 3938120 (-) True G764497
TU869969 lncRNA downstream 13023 3934470 ~ 3934808 (-) True G764496
TU869966 lncRNA downstream 25778 3921805 ~ 3922053 (-) True G764493
TU869963 lncRNA downstream 27124 3919371 ~ 3920707 (-) False G764491
TU869964 lncRNA downstream 27124 3919968 ~ 3920707 (-) True G764491
TU870707 lncRNA upstream 42229 3991732 ~ 3994954 (-) True G764962
TU870712 lncRNA upstream 43764 3993267 ~ 3998393 (-) True G764964
TU870717 lncRNA upstream 98213 4047716 ~ 4049499 (-) True G764966
TU870718 lncRNA upstream 99105 4048608 ~ 4056796 (-) True G764967
TU870716 lncRNA upstream 105566 4055069 ~ 4063234 (-) True G764965
XM_036987100.1 mRNA downstream 1280 3903121 ~ 3946551 (-) False LOC110498424
XM_036987102.1 mRNA downstream 1280 3903121 ~ 3946551 (-) False LOC110498424
XM_036987103.1 mRNA downstream 30775 3903121 ~ 3917056 (-) False LOC110498424
XM_036987097.1 mRNA downstream 46282 3851852 ~ 3901549 (-) False LOC110498423
XM_036987098.1 mRNA downstream 46282 3851852 ~ 3901549 (-) False LOC110498423
XM_036989232.1 mRNA upstream 62649 4012152 ~ 4033537 (-) False LOC118966151
XM_036987116.1 mRNA upstream 93627 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA upstream 93627 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA upstream 93627 4043130 ~ 4183512 (-) True LOC110531315
XM_036987124.1 mRNA upstream 393991 4343494 ~ 4357228 (-) False LOC110515469
TU869858 other downstream 88938 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 648728 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1460930 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 1460930 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 1969600 1962973 ~ 1978231 (-) False G763587
TU870731 other upstream 64331 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 64331 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 341292 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 496824 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 517064 4466567 ~ 4467708 (-) True G765100

Expression Profile