RNA id: XM_036989232.1


Basic Information

Item Value
RNA id XM_036989232.1
length 2535
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC118966151
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4012152 ~ 4033537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtcgaaggtGTTGTCCGTAGAGCTTAGAGACAGTATTGTGTCGCGGCACAGATGTCTCCCAACTTGGACCAGGTATGCTGTGTGTGTAACTTTAACTCCCTCTTGTCCCACAAGCAGCTATAAAAGCAGCTCTAAATGTAATCTTCTTCATCATCTCTCATTCCACCTCGTTCCCCAGGTGATCAGATGTACCCAGGTGAACTGTACCTGTCAGTGTTTCAGACCAGCCAAGACCAACCTCAGGATATGTGACCACTGTAGACATGGCTGGGTAGCTCATGCGTTGGACAAGCTCTTCCAGCCCGCCCAGCCCCTGCTCTCTGCTACCCAGGTAGAGGTGGCCCATCCTGGGGTAGTATTTGACCTGGCCTCCCTGGTCCTTTATGGAGCCACGGCTCTCCCCATCAGACTGAAGATCCTATTAGACAGACTGCTCAGTGTACTGACCCGGGATCAGGTTCTATACATTCTAAACAGTCTGGGATGGACCCTTCAAGACTACTGTAGAGGATACATACTGCAGaaCTCTTCCGGCAGCGTATTGGAGCATTGGACAGTGGTCTGTCATAAGGAAGAGATTGTGACTCTACAACAGTTCCTGAGGTTCGGAGAAACGCGGACAATCGTAGAGCTCATGACCTTTCAGGACTCACTGGGAAATGACCTCTCTGATCCCTCCTCTTCCCGGACGGTCTCCAACATCCAAGCGTTCATTGAGAGCAACAGGCAGGGCGGGCATTTTGAGATGGGCAGTCCTGTGAGTGTTCACCATTTCGAGAAAGGTAGCCCTGCTAGCATCCACCATTTTGAGAATTTTCctgccagtctctctatgctcctcccATTCCAGTTCCATAGCCCCTCCCCCTTGCAGGGTTTGGCCCCTCCCACCAGGCTGGGTGGACTACGGAGGCCCGGGAGGGTCAAACAGAGCGAAGGACCACAGCACCAGTCAGAAAGCAGCGTGTCTGAGTCTGGGTCTCCATATGGTAACCTGGTGAGTCCGGTACCGGCTGCCGTTAACGGTCTAGGAGGAGAAATAGGAAACGGAACTGGGACCAAGACGATGGAACCTAAACCTGAACACAACGAGTCACCGACGAGGTCGTCGTCAGGGCAGCCACACCGTGACCACGACCAGCAGCAGCCGGTCGGTAACCATGACGATCAACGCCTCCACCGTTGTCGACTCAGTTACCTAGTAACCAACCCTGAGCTACAGAAGAAGAACTTCGACAGCAACaacacctcctccctctcttcctcctcctccctctcttcctcctctccatcctcctcctcctctctttctatgcTGGCCCAGAGCCTGTTCCGTGTAGTGTCCcgcccctcctcatcctcctccctccgTAACGACAGGCTCTTCCCTGATGTGTcctctcccccctgctcctcctccctccccaagGGCTGGCTCTTCCCTGACGTGTcctctcccccctgctcctcctccctccctaagGGCTGGCTCTTCCCAGAGGTCTCGCCCTCCCTCCGTAAGGGCAGGGTTTGCTGTGGTGCCTGCGACAAGAGCTTCTATGACAAAGGAACCTTGAAGATCCACTACAACGCGGTACACCTGAAGATAAAGCACAGGTGCACTGTGGACGGGTGTGGTATGGTGTTTAGCTCACTGAGGAGCCGCAACAGACACAGCGCTAACCCCAATCCCAGATTACACATGGATACACTTAGACACTCACCAACACCACACAGGGAgaccgcaaacacacacacacgacacacacacacctggagtcaacacacacacacctggagtcaacacacacacacctatgacAAACTCCATAAACAACAGAGGTGCCACAACACAGCCGCAGCCGTACCCCTAAACCACACCCAGCATCCACAACAGCAACGACAACACACCCCTCTGACTCACCTTTCAAACCCCACCCCAGCCCTCCACGCAGAGCCAGACAAACCCTCCAGCCCAGACCCCCACAGGGGGCCCATCTTCCCCAGGACAGGGCATCCCTCAGTGGGCATcactgctcctctgtcctccttccagacccagCTATTGGTTTCTACTCTGGGAGAAGTCCAACCACTGTCTCAGTTCTACCGTGCTACACGACAgacctcccctcttccctcttccttgtCTCTGTTGGACCAATTGGCTTCTTCCTCCGGGTCAGTGGGAGGGGCCAAGGTTCTCGGATCATCCAATCAAGGAGGTTGGTGTACTTCAGCTGATCCCGCCCCCAAGAAGAAACCCCGGAAGTCTAGCATGCCTCTTAAGATGGAGAAGAAAGTAACTGTCTCAACGGAGGAGTGCAGACgacagggggaggaagaggagagagaggaagaggagggagaaggtaATAGGACTGAGGCTGTTTAAACAGGTCGCTAGGCAACGAGGGACTCCAACTTCACAAACTGTTCTGGAACAGAGACGCCATAAGGGAGGAAGACGGAGTGGATGAGAGACAGAACatgagagaatgaggaggaggaggatggatgaGAGACAGAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870712 lncRNA downstream 13759 3993267 ~ 3998393 (-) True G764964
TU870707 lncRNA downstream 17198 3991732 ~ 3994954 (-) True G764962
TU870688 lncRNA downstream 62649 3947831 ~ 3949503 (-) True LOC110513230
TU869970 lncRNA downstream 74032 3937915 ~ 3938120 (-) True G764497
TU869969 lncRNA downstream 77344 3934470 ~ 3934808 (-) True G764496
TU870717 lncRNA upstream 14179 4047716 ~ 4049499 (-) True G764966
TU870718 lncRNA upstream 15071 4048608 ~ 4056796 (-) True G764967
TU870716 lncRNA upstream 21532 4055069 ~ 4063234 (-) True G764965
TU870766 lncRNA upstream 53621 4087158 ~ 4088270 (-) True G765004
TU870774 lncRNA upstream 109954 4143491 ~ 4143848 (-) True G765011
XM_036987111.1 mRNA downstream 44824 3949068 ~ 3967328 (-) False LOC110513230
XM_036987112.1 mRNA downstream 44824 3949068 ~ 3967328 (-) False LOC110513230
XM_036987110.1 mRNA downstream 44826 3949068 ~ 3967326 (-) False LOC110513230
XM_036987105.1 mRNA downstream 44827 3949068 ~ 3967325 (-) False LOC110513230
XM_036987106.1 mRNA downstream 44827 3949068 ~ 3967325 (-) False LOC110513230
XM_036987116.1 mRNA upstream 9593 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA upstream 9593 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA upstream 9593 4043130 ~ 4183512 (-) True LOC110531315
XM_036987124.1 mRNA upstream 309957 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 309957 4343494 ~ 4378661 (-) False LOC110515469
TU869858 other downstream 153259 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 713049 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1525251 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 1525251 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 2033921 1962973 ~ 1978231 (-) False G763587
TU870833 other upstream 257258 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 412790 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 433030 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 541308 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 1021943 5055480 ~ 5057322 (-) True G765347

Expression Profile