RNA id: XM_036987117.1


Basic Information

Item Value
RNA id XM_036987117.1
length 4326
RNA type mRNA
GC content 0.55
exon number 27
gene id LOC110531315
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4043130 ~ 4183512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAGGGAAGCGGGAAGTGACGTACGAAAACAAACGGCAAAGATGGCGTCAAATTCACAACGGAAATCGAGACAAACATCTGGGACAACAGACTAGAATCAGTAAGTCTGGACAGAGTATCCTCTCTGACCTGACATTATGCCAACGGAAAGACCGGCGGCAGTCACTTCGGAGCGGCTCCGGTATCATGACCGACCCAGACGGAAGGACAGTGGGCAGTCCAAGCCCTCCCTGCGGGCCTCACACCCCCGATCAGCGGCTACTGCAGCCAAGTGCTGCGAGGATGAGATCAACAGACTGAAAGAGATTATCTGTGCTCTGCAGGCTGAGCGTCAGCAACAGCGCtccagggaagaggagggggacaggCTGGGGGTTGTTGGACAGGAACCGCGGGGGCCCGAGCAGCTACGATGGAGGGTCAACCAGCTGGAGAGAGACAAGCTGGAACTaacctccaaacacaacgagcaGGTATCCTCTCTAGAGGGCCAGGTGGCCAGGCTGAGAGcagcagtggagagaggagaggcacagAGACAGACTCTTGAGTACGATATGGCTTTAGCCAGGAAGGAGGCTGGAGTAGAGAGAAGTAACCTCCAGGAAAACATGGCTGCTCTCTGCAGTCAGAATGAACAACTCATGGAGCTGCAGCAGAGAGTGTGTGTCCTTCAGAAGGCTCTGGAGATAACGCGGATGGCCCGGGAAGAGGACCAGCATGCATTGCAACAGGAAGTGGAGGAGCGGGACGGACTGGTGCTGAGCGCTAACACAGAGAATGATCAGCTCACCGCTGAGAACAAACACCTACATACCTTGctgcagGATCAGGAGGAGACTCTGCAGGAGCtgaagaggaggatgggggaggtgcagagagagagggagagagacggggaggcaCTACGACGTCAGACCAGCGAACTGGGctacatcacagagagagaggagagaatgaagaaAGAActagagACCGCCCTACAGAGAGTCAAGACTCTAGAAACCAACATAGAGTCTGAGAGAGCTGCTCACCTGGAGTCTAAATTCAACTCTGAGATCATACAGctgCGTATCCGTGACCTGGAGGCAGCTCTACAGGTGGAGAAGTGTAGCCAGGCTGAAGCCGTGTCCAGTCTGGACATGGTCAAACAACAGTTCAGAGAGGTGGAGCGAGCCTAcagcatagagagagacagggcacgGGACTCTACTGGCAGACTGGCACAgCTGGAGAAGGACTACCTGAGTTCTAAGGCAGAGTTGAGTGCAGAgttggagaaggagagaagaactGCATCACAAGTCCGAGACCAACTACAGgaactacacacactacacacgcaCAGCCTGACACAGCTGGACATGGCTCGTAAGCGTCAGGTGTTGCTGGAGGAGGAATTTGAGAGCTATCTTATAGAGTTACAACAGCTACTGCAACTACACACCGCTGTAGGGCCCCTCACCGCTGTAGGACAACTCACCACAGAAGAGCCTGTTGGAGAGGGAAGAAAGCACAGCCCCTCTACTGTCATGAACATGCTGGGGACAACCCTGACAACATATCAGACCACCCTGGACCAGACTACTACAGagGTCCTGGATCAGCAGAAGCAGTCAGAGAGGCTGGTCCAGGAGGTTCAGTCCAACCAGCGACTGATGTCAGAACAGAAGAGTCACTTAGAGgaGCTCCGTGCAGCGCTGTCTGACTGTAACGTAGAGTTACAGCGTCTGAGATCCCAGTGTTCTGAAAAGACGCTCCAGACCAACCGACTACAGACTGACCTACAGACCGCCCAGCAacactgggagagggagagagaaagggagaagcagagagaaggagagagggagaaaacgagggagaagcagagggaaggagagcgggagaaggagagagagaggaccgtgGAGTTGCAGGCAGAAGTTCAGAGGATCAGACAACTCAATCAGAAAGATTCTCAGgaGAAGTTGTCGTTCCTTCACGGTCTGTTCCAGCGTCTGTTGGCGGGCTGTGTCCTCGTCTCCCAGCCGCAATGCATCCTGGGTAGTTTCTCCTGGGCGGAGCTCTGTGATGTTATAACGGAACACGTCGACACCCTCACGTCTGACCTTACACGCGCCAACGAgagggtgtcccacctgcaggctgtgtgtgagagtaacagtgtgtgtgtatctcagcTGCAGCAGAGCCAGGAAGGGGTGTTAGTGAGAATAGaggagacagtgaaacagagagaagagacctGGACAGCACAGAGACATGAGATGgaccagcaacacacacacactgttacactgctACAGGGGAAGatacagatgTTCGGTGCTCAGCTTGAGGAGGCCCGTCAGAGACTATCCTCACTAGAGAAAGAACGCAGCCAGCTGACCAATGACCTCGCCATGCTCCAGAAAACCCTAACCCAGTCTGACCTCCAGGGGTCAACCCTGCTCTCAGCCTGCACCCTACTGGCTGGGGCgctcacacacctcacacacgccacacacacactccgcacaCAGAAAACTCTCCTCACGCGCCGCTTGGCGGAGCGAGAGGGCCTAGAGATGGAGGTTAGAACGCTTGTACAAGCTctaggggagggaagaggagagggggatgaggagaggaagggaggaggggtgaggaggtggagaaggtgtgtggtgtgtgtgatagctgtgaacaggttgtgtgtgttggGACGGGGGAGCAGACTGGTGTTTAGGGTGGGTGGGCAGAGGTACCCCTCTATAGGGGTTCGTGTTTCAGTCGTCCCTcctctggaggagagagagaaggactcaACACCGCCATCTAAAGgTGAAGAGGATAATGacgatgaagggagaggaggactgtgtGTGAGGTGGCTTCGTCGTAAAGATATCTCCTTCTTCATCATGTCTTCCATGGCTGAACTACAAGAGGCCTTAGAGCACACAgttTCTTCCTCTCAGGTGGTATTGTCTGCCGCTCGTAACAGTCTATCCCGCCTCCTGGACCACCTCCTCACCCCCTCAGACCGAGGGTCCCATCTCACACCCTATAGCGTGAACAAGGGTACTCTGGTTAGTAGGCTGGGACAGGGCTTACACCGACTCACGGCCAAACAGATGAGCAATAAGTGTCTGGTGGTTTCGCTGCAGCAAcacttcctggttttcacccaccGGCTGCACTCCGCTGAGGTGGAGAGGCGGAGCCTGAGGTTAGAGGTCGCACGCCTCAAACGTGTCACCAAGGGCGACCGAGGACCGTGCCACCTGgtgCCAGCAGAGCGGTTTGGCAGTGTCTGTGAGGAGTTGAGACAGGCcttacagagagaggagcaggctcAGGGTCTACTGAGACAACAGTCTGACCAGCTACACACACTAGGGTTACGCATGGACACACattgtggagaagagagagagagagaacacacactatCACAGGCCGTACAGAGTCTGTCGGAAGCTCGTCAGGAGGTGCGTCAGAAGGAGCAGTCTCTAAGGGTTCTGGGTAAACACCTGTCGGGCCTACAGCAGGAGAAGAAGAGTCTGGAGGAGAGTGTCAGACACGCGGAGGATGCACTACGCATGTCAGCCAAgcgcAAGGACTCCCTGGCCAGCTACATGAGAGCAGTAGAGAGCAGCTACAGAGAGGTCAGAGACCGTATTGTCCAATCACGATCCACCTCCACTGACAAGGACCTCCCTCTGCAGTTACCAAGAGTGCACCTGGATCTGACTGGACCAGAGAGGTTGCTGGGAGGGCCGGACGTGGCCGCCTGTCAGAGCCTGGTGGGGACGTTCTCTGAGTTATACCACGCAGCGTTCTCCAGGATTGGTTCGATGGAAAGGGAAATCTCCGCCCACCAAAGCCATGTCTCCGCCCTCCGGAAAGAACTACACGATGCCTGTCTCAGGGAGGACCTCTGTTTCATCCCTGTGTGCGATTCTCAATCGTCAATGACCCCTCACCCAGACGACCTCTGTCAACTCGTCGTTGACCCTGAAGCCCCTCCTACCGAACGCACCAACGTTCTGCTGAGGGAGGCAACCGGCAAACCCAACCCTaccccctccctcgctccctccctccccttgtcAGACCCCCCTAAAAAGGCTAAGTGCAGTAAGAAGGTGCCCAAGAAGACTCGTTCTGTACCGCCCAAGGCTCCGTCAAGAAGATAGACCACAGAATCACTGTtatgtgttacagtgtatctgttatgtatctgttatgtgttacagtgtatctgttgtgtgttacagtgtatctgttATGTGTTACAGTATATCTGTtatgtgttacagtgtatctgttatgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870712 lncRNA downstream 44737 3993267 ~ 3998393 (-) True G764964
TU870707 lncRNA downstream 48176 3991732 ~ 3994954 (-) True G764962
TU870688 lncRNA downstream 93627 3947831 ~ 3949503 (-) True LOC110513230
TU869970 lncRNA downstream 105010 3937915 ~ 3938120 (-) True G764497
TU869969 lncRNA downstream 108322 3934470 ~ 3934808 (-) True G764496
TU870790 lncRNA upstream 8584 4192096 ~ 4193033 (-) True G765021
TU870757 lncRNA upstream 22627 4206139 ~ 4207825 (-) False G764997
TU870758 lncRNA upstream 22627 4206139 ~ 4207825 (-) False G764997
TU870759 lncRNA upstream 22627 4206139 ~ 4207825 (-) True G764997
TU870797 lncRNA upstream 25118 4208630 ~ 4208976 (-) True G765028
XM_036989232.1 mRNA downstream 9593 4012152 ~ 4033537 (-) False LOC118966151
XM_036987111.1 mRNA downstream 75802 3949068 ~ 3967328 (-) False LOC110513230
XM_036987112.1 mRNA downstream 75802 3949068 ~ 3967328 (-) False LOC110513230
XM_036987110.1 mRNA downstream 75804 3949068 ~ 3967326 (-) False LOC110513230
XM_036987106.1 mRNA downstream 75805 3949068 ~ 3967325 (-) False LOC110513230
XM_036987124.1 mRNA upstream 159982 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 159982 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 159982 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 159982 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 170808 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 26721 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 26721 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 184237 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 744027 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1556229 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 107283 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 262815 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 283055 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 391333 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 871968 5055480 ~ 5057322 (-) True G765347