RNA id: XM_036989234.1


Basic Information

Item Value
RNA id XM_036989234.1
length 1883
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110515470
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4445724 ~ 4448001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGACGCTAAGCCTTGTGGGATATTACTGAATGTGAACTCAGCAACCGTAATTCCAGAACAGTCCCACTGTTGTAATAGTGTGATGTGTATCTTCTGACAGACTCTATGCTGAGTAAAGTCATGTTTTTATCCTAAAACGTTTTTCTACCAGAACCAAAGTGTGGATGCAGTCACTATTTAGAGCAGTCTAATCTCATTAACCCAGAACTATAATCTCATTAACCCAGAACTATAATCTCATTAACCCAGAACTATAATCTCATTAACCCAGAACTATAATCTCATTAACCCAGAACTATAATCTCATTAACCCAGAACTATAATGTCATTAACCCAGAACTATAATCTCATTAACCCAGAACTATAATCTGTGTGATTAAATTCTGGGTCCATACGTGTTAGAAACTACAGTAGGTGAGTCACATGTTATTTGTTACATCAGTTTCCATGGAAACATACAGAGGAGTTTATGCAAATCAACCCTTTCTGTCTTGACACATGAAGGAGGAGTCTCTGAAAACCTATTTAAAGCAGTCTGTCCTGACTCAGCTCAACAGTCTCCAGTCTACCAACTGGTCTCTGTAACTTCATCTTTGTCTCTGTGGTGTACAGTCTTCAGGTGATGATGGGGGTATTGAatcatctctctactctcctcctcctctctctccttcctcctgctctctctcatgTAGTGGATAAGTTCAGTGATGTTCCACAGTGCAAGACGTTCTTCCTGAAGGAGACAACTCCAAATCTCCCAGGTATTTTGGTTGGTGGGACAGTCCAGGACCAGAACCGCTACAAGCCGATTTGCCAGAAGTACAAGAACAACTACAGGTTTGCAACTCTCTACGACACGACCAACAAGATCCCTGTGTTCTCAGCCTACACCTTCTCTGGTCCTCCTACAGACCCCAGACCAAAATATCAACCCTGGATGATCGAGCCCCAGCTTGAAGATGTAGAAGATGTAGAAGAGATGAAAACCCAACGTGAGGTGCTTAATAATAACAAAAGAGCCAACCATCAGGCTGTGGACGCAGACTACGATGCAACAATAAGTAGCATGGATCTGGACAGAGGTCACCTGTTCCCATGTAACGCCGCACCTGATGATGCTACCATGAGGTCCACTTTCACCCTGACAAACGCCGTTCCCCAGGAAAGAGGCTTTAACCGAGGCAGATGGTGTAAAATGGAGGGCAGAGTCAGAGAAGCTCTTGTGAATAACTGtaagaataacaacaacaagatAGAAGCCTATGTGGTGACTGGAGCAGTgcccagcaacaacaacaacaacaaactgaaCCAACGATTGAACATCCCAGATCTCATGTGGACAGCCTTCTGCTGTTACAACAAGGACAAAAAGTGGACGGTCGGAGCATACTGGGGGGAGAACAAAAACGACAATGGGAAAATATTGAACCTGGAAACCTTGGGAGAACTCGAAGCCAAGTTGAAGCAAAGCTACAATGGTGGTGATGTCAAGGTGTTTCACGATAACTGTCCAAGAAACGTTAAAGTACAACAGGTTAACACGACAGGGAAAAAGAGGACCAGGGAAGGGATGGCGATAGCATCAGGGAAGGATTGTGATGCCGAGGATGGATGTGATTGTGACTGTGATGAAAAGTAATGAGTTTTGTCCAGTGGTAATTCCCACAACTATTCAGTACACATTCCCTACGTTACAAGGGTTATAATGGTTAAGTTATAAGGGTTATAAGGGTTAAGTTATAATGGCTATAAGGGTTTAATGGTTATAAGGGTTATAAGGGTTTCATGGTTATAAGGGTTATAAGGGTTAAGTTACAAGGGTTATAATGGTTTAATGGCTATAAGGGTTAAAGTGGTTATAGTGGTTATATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870935 lncRNA downstream 860 4444410 ~ 4444864 (-) True G765130
TU870928 lncRNA downstream 19225 4424750 ~ 4426499 (-) True G765124
TU870927 lncRNA downstream 21292 4424008 ~ 4424432 (-) True G765123
TU870877 lncRNA downstream 109662 4332948 ~ 4336062 (-) True G765092
TU870873 lncRNA downstream 115583 4329917 ~ 4330141 (-) True G765088
TU870947 lncRNA upstream 37551 4485552 ~ 4553720 (-) False G765141
TU870948 lncRNA upstream 38691 4486692 ~ 4555076 (-) True G765142
TU870956 lncRNA upstream 43812 4491813 ~ 4528188 (-) False G765144
TU870957 lncRNA upstream 44265 4492266 ~ 4528188 (-) False G765144
TU870955 lncRNA upstream 45688 4493689 ~ 4529405 (-) True G765144
XM_036987122.1 mRNA downstream 52410 4343494 ~ 4393314 (-) False LOC110515469
XM_036987125.1 mRNA downstream 52413 4343494 ~ 4393311 (-) False LOC110515469
XM_036987126.1 mRNA downstream 67061 4354320 ~ 4378663 (-) True LOC110515469
XM_036987123.1 mRNA downstream 67063 4343494 ~ 4378661 (-) False LOC110515469
XM_036987124.1 mRNA downstream 88496 4343494 ~ 4357228 (-) False LOC110515469
XM_036987131.1 mRNA upstream 17469 4465470 ~ 4467687 (-) True LOC110518373
XR_005053437.1 mRNA upstream 80650 4528651 ~ 4529593 (-) False LOC118966171
XR_005053438.1 mRNA upstream 80855 4528856 ~ 4529593 (-) True LOC118966171
XM_036987132.1 mRNA upstream 86164 4534165 ~ 4536040 (-) True LOC118965974
XR_005053146.1 mRNA upstream 116759 4564760 ~ 4565401 (-) True LOC118965975
TU870833 other downstream 125898 4290795 ~ 4319826 (-) True G765059
TU870731 other downstream 429315 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 429315 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 586831 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 1146621 3296302 ~ 3299103 (-) True G763961
TU870887 other upstream 18566 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 126844 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 607479 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 849475 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1753368 6201369 ~ 6202730 (-) False G766599

Expression Profile