RNA id: XM_036987137.1


Basic Information

Item Value
RNA id XM_036987137.1
length 2547
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC118965976
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4875082 ~ 4879698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTACCTGagtactacctctactactaataatactatataatatactgtaataatacTATATATGTTGTTACTAGGTCAGTTTAGTTCAGCGGTGACTCTGCTAGAGTACTACTGCTATAAGAACAGCTGGGCTCTACCTGagtactacctctactactaataatactatataatatactgtaataatacTATATATGTTGTTACTAGGTCAGTTTAGTTCAGCGGTGACTCTGCTAGAGTACTACTGCTATAAGAACAGCTGGGCTCTACCTGAGTACTACCTCTACTCTACGCCGGGACAAGATGGGAAGCTAATGCTCATATACAAGGTCGTGATCTCGTCGACGAGGAGTAGCTTCATGCCAGACAAGGTGTGTACGGTGTTGGAGGACGCTAAGGAGCTGGCAGCCCAGAATGCACTCTGGAACCTGGACTGTTCCTTCCTCAACGGTAGTTCCCCGGGttcgctctctcctcctcttcctcccgtcTCCTacggttctctctctcctcctcctgtctccaaCAGCCCCGGTCTCCTCTCATACGGCTGTACCAGAGCCttcccctaccctctctctcccaccaccccACAGAGACTCTATATCCCCCCTAATCAGAACCCTGCCTTCTTCTGATCATCCCTCCATCATCACTCGCTGTGTGAGAAGAGGGAAcacagggatggaggagggaggtggaggtgaACAACATCTAGTTTGTTACTGAGCCATTTTACTTTTGTGTTGGATGTTTGGTTGGTTTAGTTTTTCGGGTCGTTTGGTTTTCAAAAGACGGCCATTCTGTAATTCATATGTTAAGTTGACTCAGGAAGGGCTGCATTCATTCTGCTCACAGTGTTACTCTATGCGGCAAAGGTACATGCTAAGCGGGATCCTCCGGACGTCTAACTCCGACGTCACCCCgtttgaagttgacatttaaaattgttacggtaagggttaagtttagggttaaggtaagggtagggTTTAAGGTACGGGTAGGGTTTTAGGGTAGGGTTGTCCCAAGGCTCCCACATAGCATCTACCCAAACCCCATATAGTTAAGGTAAACAAGGGAATTATAGATCAAACTGAAGAAAACCTCATTTACTTTAGCGCTTATTTTATATCTTGGCAATAATGATACTTGAATAGTATTGACTTTTGACCATATGTAtttataaaacatgatttaaataTTTTAgtgacttttttttatttaaatgtactgtattttatttttatgtcatCATCCACCTATATTATCTTTTACGGCAGTATATTTAGGTCCTATTGTATCGTATAATATTCAAAAAATCAAACAATGTCAAAATTCTgtactgaaaaaaaaaaatatctactTCTAATTTGTTATTCAATTCATGATTTATTTATTAGCAGCTGGTGATTTTGAACAACAAAGGGAAATCAAGTGAGCAGATCTAAATGGAAAAGCCGATGTGTAAAAGACAATCCAAAATGGTTCCGTCACATAATATATTTATTGAGATTTAAATattgaatattattattattattaacattatAAAGACATAGCGATCATCAACAAGACAGCGTTGCCTCTCCTCCAAAAATATTCACTTTTCATTTTgttgtctttttttattttaaatgtcatTTACAGTTTTTGTCAAAAAAAAAGtgatttaaagggatactgtGGGTTTTAAAGGGATACTGTGGaatttaaagggatactgtgggatttaaagggatactgtgggatttaaagggataatgtgggatttaaagggatactgtgggatttaaagggatactgtggGATTCGTTAGAGGGATACTGTGGGATTCGTTAAAGGGATGCTGTGGGATTTTTGCattgaggccctttatctacttccccacaGTCAGATGAACCATTTTTACGTCTCTGCGTCTAGTATGAAGGACGCCTAGAGGTAGTttcacgagccaatgctaactagcgtgcTAGcatatacccatagacttccagtcgttgcgctagcgctagttagcaactttctTCAAACTGCATGGCAGACACGTACAAAATGGTATCTACTGAGTTCATCTGACTGAGGAAGTAgattaaaaaaaagaaatccagaagTATCCTTTTAAATGAACAAAACTGATGTACTGTACCGGTGATACCGGTCCATATTGTCTCTCCAGTTGGTTCAGTTGACCgtcgggaacacacacacacacacacaccggtacagatacacacacacacacacacacacaccggtacagatacacacacacacacacacacacaccggtacagATACACACACCGGTAAATAAATTCTAAAAGTTCTGTAATTTTTCTCCAGCAGTTGTTTTGTTTACATCTATGTTGTTTACACTTCGTTGTTATGGTTTCCTCCCATGTTGTTCTCATGGGGTGCTCagttctattccctatatagtacactactttagaccagagccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctatt

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871120 lncRNA downstream 31842 4842442 ~ 4843240 (-) True G765260
TU871105 lncRNA downstream 72882 4801955 ~ 4802200 (-) True G765246
TU871082 lncRNA downstream 112507 4760163 ~ 4762575 (-) True G765224
TU871071 lncRNA downstream 165899 4708750 ~ 4709183 (-) True G765217
TU871064 lncRNA downstream 188567 4685170 ~ 4686515 (-) True G765210
TU871152 lncRNA upstream 8547 4888245 ~ 4889320 (-) False G765284
TU871153 lncRNA upstream 9393 4889091 ~ 4889945 (-) True G765284
TU871155 lncRNA upstream 20644 4900342 ~ 4910027 (-) True G765286
TU871164 lncRNA upstream 24400 4904098 ~ 4907027 (-) True G765290
TU871165 lncRNA upstream 25195 4904893 ~ 4905327 (-) True G765291
XM_021594424.2 mRNA downstream 299216 4574163 ~ 4575866 (-) False LOC110515555
XR_005053146.1 mRNA downstream 309681 4564760 ~ 4565401 (-) True LOC118965975
XM_036987132.1 mRNA downstream 339042 4534165 ~ 4536040 (-) True LOC118965974
XR_005053437.1 mRNA downstream 345489 4528651 ~ 4529593 (-) False LOC118966171
XR_005053438.1 mRNA downstream 345489 4528856 ~ 4529593 (-) True LOC118966171
XM_036987135.1 mRNA upstream 206 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA upstream 484 4880182 ~ 4900797 (-) True rbm46
XM_036987138.1 mRNA upstream 22188 4901886 ~ 4916456 (-) True LOC118965977
XM_036987139.1 mRNA upstream 43333 4923031 ~ 4933486 (-) False LOC110532986
XM_036987140.1 mRNA upstream 106114 4985812 ~ 5018523 (-) False LOC110518233
TU870895 other downstream 299210 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 339003 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 407374 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 555256 4290795 ~ 4319826 (-) True G765059
TU870731 other downstream 858673 4013834 ~ 4016409 (-) False LOC118966151
TU871235 other upstream 175782 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 417778 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1321671 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1321671 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1371899 6251597 ~ 6256628 (-) True G766640

Expression Profile