RNA id: XM_036987136.1


Basic Information

Item Value
RNA id XM_036987136.1
length 1341
RNA type mRNA
GC content 0.54
exon number 13
gene id rbm46
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4879904 ~ 4900797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACACAGACCGAGCGTCCGACGTTAGCTGACCATATGGACGGAGACGGCGGTAGTGTGACCGGGGACGACGGGAGGACGGAGAGCCCGAATGAGGCTGCGCTTCTAGCGCTGATGGAGACCACGGGATACAGCATGGTACAGGAGAACGGACAGAGGAAGTTCGGTGGCCCGCCTCCAGGTTGGGATGGCCCTCCTCCCCCACGAGGGTGTGAGGTGTTTGTAGGTAAGATCCCCAGGGACATGTATGAGGATGAGTTGGTGCCCGTGTTTGAGAGAGCTGGGAGAATCTACGAGTTCAGACTGATGATGGAGTTTAGTGGAGAGAACCGGGGCTACGCTTTCGTCATGTACACTACCAGAGAGGCAGCTCAGAGATCCATCCATCTCCTAGACAACCATGAGATCAGACCAGGGAAGTTTATAGGAGTGTGTGTCAGTCTGGACAACTGTAGATTGTTCATAGGGTCTATACCCAAAGACAAGACGAAGGAGGAAATACTAGTGGAGATGAGGAAGGTGACAGAAGGAGTGGTAGACGTCATAGTTTATCCCAGCGCTACAGACAAGACTAAGAACAGAGGGTTTGCCTTCGTTGAGTACGACTCTCACAAAGCAGCTGCCATGGCACGGAGGAAACTaataccagGTACGTTTCAGCTGTGGGGCCACACTATCCAGGTGGACTGGGCCGAACCAGAGAAGGATGTTGACGAGGAGACTATGCTACGTGTCAGAGTGCTCTacgtcagaAACCTGATGATGACAACTACTGAAGAGACACTGAGACAGGAGTTCTCTAGATTCAAACCTGGCACTGTGGAGagagtcaagAAATTGACAGACTATGCGTTTGTCCACTACCACTCCCGTGAGGACGCAGTGACGGCTTTACACCTGATGAACGGAGCGCTGATCGACGGAGCCACCATCGAGGTCACCCTCGCCAAGCCTGTCAGTAAAGAGGGCGGTCGGCGGTTCGGTAACCGTGGTTATGTCGGTAACAGTAACCTTGTGGGTCCCTACGGCGATGTGTCCTCCACCGGGAGTTTTCTCTTCCAGGGACATGAGGATGGAAGCATGATGGGAGGAGgaggaggagggatggaggtagggactCCTCTACGACCACTCAGCCTGCCACCTCGCCTGGGGAGTCTCTACGTTGGAACAGGAACAGGGGAtgtggagaggtgtgtgtatCCCATCTTCGCTGGCTCCAGTCTCTCCCCCGCCAGCCTGCTGTCACTCAAACCAGGTCAGTTTAGTTCAGCGGTGTCTCTGCTAGAGTACTACTGCTATAAGAACATTTAGGCTCTACCTGagtactacctctactac

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25082 RBM46; RNA-binding protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871120 lncRNA downstream 36942 4842442 ~ 4843240 (-) True G765260
TU871105 lncRNA downstream 77982 4801955 ~ 4802200 (-) True G765246
TU871082 lncRNA downstream 117607 4760163 ~ 4762575 (-) True G765224
TU871071 lncRNA downstream 170999 4708750 ~ 4709183 (-) True G765217
TU871064 lncRNA downstream 193667 4685170 ~ 4686515 (-) True G765210
TU871164 lncRNA upstream 3301 4904098 ~ 4907027 (-) True G765290
TU871165 lncRNA upstream 4096 4904893 ~ 4905327 (-) True G765291
TU871148 lncRNA upstream 14173 4914970 ~ 4916039 (-) True G765280
TU871167 lncRNA upstream 18466 4919263 ~ 4929340 (-) True G765292
TU871175 lncRNA upstream 20461 4921258 ~ 4922233 (-) True G765295
XM_036987137.1 mRNA downstream 484 4875082 ~ 4879698 (-) True LOC118965976
XM_021594424.2 mRNA downstream 304316 4574163 ~ 4575866 (-) False LOC110515555
XR_005053146.1 mRNA downstream 314781 4564760 ~ 4565401 (-) True LOC118965975
XM_036987132.1 mRNA downstream 344142 4534165 ~ 4536040 (-) True LOC118965974
XR_005053438.1 mRNA downstream 350589 4528856 ~ 4529593 (-) True LOC118966171
XM_036987138.1 mRNA upstream 1089 4901886 ~ 4916456 (-) True LOC118965977
XM_036987139.1 mRNA upstream 22234 4923031 ~ 4933486 (-) False LOC110532986
XM_036987140.1 mRNA upstream 85015 4985812 ~ 5018523 (-) False LOC110518233
XM_036987142.1 mRNA upstream 85015 4985812 ~ 5018523 (-) False LOC110518233
XM_036987145.1 mRNA upstream 85015 4985812 ~ 5018523 (-) False LOC110518233
TU870895 other downstream 304310 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 344103 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 412474 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 560356 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 863773 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 154683 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 396679 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1300572 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1300572 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1350800 6251597 ~ 6256628 (-) True G766640

Expression Profile