RNA id: XM_036987138.1


Basic Information

Item Value
RNA id XM_036987138.1
length 1285
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC118965977
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4901886 ~ 4916456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactCTGTCTCTCCGTTTCTCAGtcaactctccccctctctctctctctatccacactCTGTCTCTCCGTTTCTCAGTCAACTCTCCGCCTCACCTCCTAAAATATTCCGTCCGTCTCTCCAGTCCTCTTCTCCTCGcacccttctcttctcctctctcctcctctctcctcctcctccgtgtcAGGACCATGTTTCCTCTGACGCTCCTCGGCCTGCTGTTCATCACCGCACGAACAGACGACAAGACGAAGAAGGGGAAAAACCAGGCGGCGACCAAAGAGGACGCTCCATCGAAGTATGACTCCATGTTCCAGAGAGGAGACCTGCTGGAGGTACCCCGGACGTTGTTCACTCATTTTGGGATCTACCTGGGCGGCGGCAGGGTGGCTCACCTGATACCTGACATACTACCTGTGTTGTCAGATGATGAGGAGGCTATCAGAGAGATGGTCACCAATAACAGACTGATACTGGGGGTCATCGCtaagTGTGCCAGTGTGAGAGTGGACACTGTGCAGGACTTTGCCTACGGCTCAGAGATTATTGTGAACCCCATGGACAAGGTGTGCAGTCGCCCCCCACTGAAAGGAGAGGAAGTGGCAGACAGGGCAGAGAAGCTTCAGGGCTCCACGGCCTACAGCCTCCTGTGGTATAACTGTGAACACTACGTCATGTACTGTCGATACGGCACCTGCATGAGCTTCCAAACCTTCCAGttctgTAAGACAGTGAAGAAGTTCATTCTGAGCCAGAGGAGTGCCAAGGTGACAGCGGTGTTAGGCCCAGTGCTAGTGCTCTATCTGGGGGTCGTGTCGCTCTACTCAGCCCTGGTCATTGTCCTGGTTCCCTTCATTATCTGGATGGCTTCCTAGACActtggagggaaggaaggagggaagggaaggaaggaaaggaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaattgTTTTACAAAAATTCTTTGCAGTCTTGTTAAAGATAATGGATAATTACAGGATGACCAGACAGACATAGGGTTTCTTCAATAACTATTAATAATAATTTGCCACTGCTTCATAAGACCTAGTAATGATGCCAATACATGTGTTTACACCCTGTGTTTTATTTTAATTGATTAATTACATAAGTGTGAATGGTATACTATTTTGACCTGTATAACAGTGAATTAGGTTgctataaataaaataaacatttaaatggTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871068 lncRNA downstream 9207 4700285 ~ 4892679 (-) True G765214
TU871153 lncRNA downstream 11941 4889091 ~ 4889945 (-) True G765284
TU871152 lncRNA downstream 12566 4888245 ~ 4889320 (-) False G765284
TU871120 lncRNA downstream 58646 4842442 ~ 4843240 (-) True G765260
TU871105 lncRNA downstream 99686 4801955 ~ 4802200 (-) True G765246
TU871167 lncRNA upstream 2807 4919263 ~ 4929340 (-) True G765292
TU871175 lncRNA upstream 4802 4921258 ~ 4922233 (-) True G765295
TU871174 lncRNA upstream 6394 4922850 ~ 4923484 (-) True LOC110532986
TU871199 lncRNA upstream 67817 4984273 ~ 5000017 (-) True G765315
TU871200 lncRNA upstream 69530 4985986 ~ 5015991 (-) False LOC110518233
XM_036987135.1 mRNA downstream 1089 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA downstream 1089 4880182 ~ 4900797 (-) True rbm46
XM_036987137.1 mRNA downstream 22188 4875082 ~ 4879698 (-) True LOC118965976
XM_021594424.2 mRNA downstream 326020 4574163 ~ 4575866 (-) False LOC110515555
XR_005053146.1 mRNA downstream 336485 4564760 ~ 4565401 (-) True LOC118965975
XM_036987139.1 mRNA upstream 6575 4923031 ~ 4933486 (-) False LOC110532986
XM_036987140.1 mRNA upstream 69356 4985812 ~ 5018523 (-) False LOC110518233
XM_036987142.1 mRNA upstream 69356 4985812 ~ 5018523 (-) False LOC110518233
XM_036987145.1 mRNA upstream 69356 4985812 ~ 5018523 (-) False LOC110518233
XM_036987141.1 mRNA upstream 69359 4985815 ~ 5018518 (-) False LOC110518233
TU870895 other downstream 326014 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 365807 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 434178 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 582060 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 885477 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 139024 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 381020 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1284913 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1284913 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1335141 6251597 ~ 6256628 (-) True G766640

Expression Profile