RNA id: XM_036987139.1



Basic Information


Item Value
RNA id XM_036987139.1
length 1137
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110532986
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4922850 ~ 4933486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTGAAGACGATAGAGGAGCGCGAGGCGAGGAGGACAACATCTCggggaaaaaaaacaaggacaaGAAATTTACCTCCAATAAACATGTTGGATTCGCTCACATTACTCCTGGAAAAAGTACTCTTCCTCACTCACCTCAATGTCTTCAATCAGTTCAGGACCGGTCTGTTTTTTtccgacacacagagagagagggagaagaagataGTTACAAATCACTGCGAGAAAGAGGAGGTCCCCGATCCCTCCGCCTGCACCGCACTCACAGACTCCCTGTACCAGCGGGGAGACTTGTTAGAAGTTCCCCGGACTCTATTCACTCATTTCGGCATCTATTTAGGGGACAACCGGGTGGCACATCTGATTCCGGATATCTTGCCACTCTTTACAACGGACAAGCTTTCCATTCAGGTGATGGTAACTAACAAACGCTTAGTTCTTGGCGTTCTATCCAAGAGCGCCAGCATCCGGGTGGATAGCGTTGAGGACTTTGCCTACGGCGCGTCAATTCTACTGAACGCTATGGACACTACCGTGCAGAAACGACCGTTGGATGGCGAAGAGATTGCCAGGAGAGCGGAGGAAATGGTTGGGAAGATACCGTACAGTTTACTGTGGAATAACTGTGAACATTTCGTTACTTACTGCCGGTACGGCAGCGCAATCAGCATTCAGACAGACAAGTTCTGTGATTGGCTGAAATCTGTCATCCGGGATCATAGGAGTGTTCCGCTGACGGCGATCCTGGGAATTCTGTCTATTCTCAGTCTGGGAATGTCCCCTTACACCACGCTTCCCACCCTCCTCATCCCCTTCACCCTCTGGATGGCAGGCTGATACCTGGGAATTCTGTCTTTTCTCAGTCTGGGAATGTCCCCCTTACACCACGCTTCCCACCCTCCTCATCCCCTTCACCCTCTGGATGGCAGGCTGATACCTGGGAATTCTGTCTATTCTCAGTCTGGGAATGTCCCCCTTACACCACGCTTCCCACCCTCCTCATCCCCTTCACCCTCTGGATGGCAGGCTGATACCTGGGAATTCTGTCTTTTCTCAGTCTGGGAATGTCCCCTTACACCACGCTTCCCACCCTCCTCATCCCCTTCACCCTCTGGATGGCAGGCTGATACCTGGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU871175 lncRNA downstream 798 4921258 ~ 4922233 (-) True G765295
TU871148 lncRNA downstream 6992 4914970 ~ 4916039 (-) True G765280
TU871155 lncRNA downstream 13004 4900342 ~ 4910027 (-) True G765286
TU871164 lncRNA downstream 16004 4904098 ~ 4907027 (-) True G765290
TU871165 lncRNA downstream 17704 4904893 ~ 4905327 (-) True G765291
TU871199 lncRNA upstream 50787 4984273 ~ 5000017 (-) True G765315
TU871200 lncRNA upstream 52500 4985986 ~ 5015991 (-) False LOC110518233
TU871206 lncRNA upstream 54007 4987493 ~ 5008878 (-) True G765320
TU871201 lncRNA upstream 68948 5002434 ~ 5003604 (-) False LOC110518233
TU871202 lncRNA upstream 83786 5017272 ~ 5018456 (-) True LOC110518233
XM_036987138.1 mRNA downstream 6575 4901886 ~ 4916456 (-) True LOC118965977
XM_036987135.1 mRNA downstream 22234 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA downstream 22234 4880182 ~ 4900797 (-) True rbm46
XM_036987137.1 mRNA downstream 43333 4875082 ~ 4879698 (-) True LOC118965976
XM_021594424.2 mRNA downstream 347165 4574163 ~ 4575866 (-) False LOC110515555
XM_036987140.1 mRNA upstream 52326 4985812 ~ 5018523 (-) False LOC110518233
XM_036987142.1 mRNA upstream 52326 4985812 ~ 5018523 (-) False LOC110518233
XM_036987145.1 mRNA upstream 52326 4985812 ~ 5018523 (-) False LOC110518233
XM_036987141.1 mRNA upstream 52329 4985815 ~ 5018518 (-) False LOC110518233
XM_036987144.1 mRNA upstream 52331 4985817 ~ 4993269 (-) False LOC110518233
TU870895 other downstream 347159 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 386952 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 455323 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 603205 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 906622 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 121994 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 363990 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1267883 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1267883 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1318111 6251597 ~ 6256628 (-) True G766640

Expression Profile