RNA id: XM_036987140.1


Basic Information

Item Value
RNA id XM_036987140.1
length 1476
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110518233
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4985812 ~ 5018523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTGATAAACATCCGTCACCGGGTCACAGCCAGCGACGGATGAGAATATATTTGTtattttgaacctttatttaactaggcaagtcagccaATATGAAGACTTCTTTGCCCTTCTGGTTGTGTACAATGTCAATGATCGGAATATCATCAACATCTAGTGATACAGTTGTTCAACCCATTGTGGCCTTAGTTGGTGATGACGTCATCCTGCCTTGCACCCTGAGACACACCGTCAGTGCTGTGCATCAGTCAGTAGAGTGGCAGAGACCGGACCTAAACCCAAAAGAGGTCCATCTTTACAGAGATGAGAAGGACGATCTGGTGCTCCAGAATCCAGTCTTCAGGGGAAGGACGTCACTGTTTAAAGAAGAACTAGAGAACGGCAACACTAGTTTAAAGTTGACCAGAGTGAAACTCTCTGATGCTGGAAACTACACCTGTTACATTCCACTGCTGGACCACCAGAAAACCATCATTCAACTCCTTGTTGGTGAGTCAACACACCTGCTGACCACCCAAACCCCCTTAAGAGACAGATCTCATGAAATCAAGGGTGCTGTGTCCAGACCAGTTATCATCATTGAGAGAATGGAAGGCGATGAGGTGGTCCTGCGGTGTGAGGCTGAAGGCTGCTACCCAGAGCCTGTCATGGAGTGGTTTGACGCTCAGGGACGTGTCCTCCCTGCTGCTGGACCTACAGAGACGTCCAGAGACCGTGAAGGCTGCTACACTGTGACAAGCCATGTCATCGTCCCGAACTCTGACAACAACACCTTCACCTGTCGCGTTCAACAGTTGGAGATCAAACAcatgaaggagagacaggttcaTGTTCCAGATCAAATGTTTCCTAAGACTTGTCATTCCTCCTGGCTGACAGTTCTTGGAGCCGTTCTTGTTACAGTTCTTGTTGAAGCTGTAGCTGGAGGTCTCTACCTGTTGATAAAAAAAGGGATATTGACCTTCAGAAAGGAAGCGTGGACGTCAGTAATGAAGAACATGGAGACGATGAAGAATGAGGAAGATGAGGAAGCGTGGACGTCAGTAATGAAGAACAAGGAGACGATGAAGAATGAGGAAGATGAGACCAGTGAATCCCAGTCTTTCATTGGTTTAGATGATGTGAAATGATCTATAATAATAGTATTATGTGTCATTTAACAGAAATGTTTGgatggtcccaggaatcaaacccactatcctggagTTACAAGGACCTTAACTATGACTACATAGGAATATGCATGGCTatgtttacattttagtaatttagcagacgctcttatccagagcaacttacaggaacaattagggttaagtgccttgctcaagggtacattgGCAGACTTTTCATCTTGTcatctcagggatttgaaccagcgacatTGGTTACTGGCcccacgctcttaaccactagtctacctgccactccatatatggcactagtctacctgccactccatatatggcacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871167 lncRNA downstream 56472 4919263 ~ 4929340 (-) True G765292
TU871174 lncRNA downstream 62328 4922850 ~ 4923484 (-) True LOC110532986
TU871175 lncRNA downstream 63579 4921258 ~ 4922233 (-) True G765295
TU871148 lncRNA downstream 69773 4914970 ~ 4916039 (-) True G765280
TU871155 lncRNA downstream 75785 4900342 ~ 4910027 (-) True G765286
TU871230 lncRNA upstream 27012 5045535 ~ 5047502 (-) True G765343
TU871269 lncRNA upstream 127790 5146313 ~ 5146613 (-) True G765377
TU871473 lncRNA upstream 163617 5182140 ~ 5183023 (-) True G765529
TU871474 lncRNA upstream 163801 5182324 ~ 5214592 (-) False G765530
TU871475 lncRNA upstream 163801 5182324 ~ 5214592 (-) False G765530
XM_036987139.1 mRNA downstream 52326 4923031 ~ 4933486 (-) False LOC110532986
XM_036987138.1 mRNA downstream 69356 4901886 ~ 4916456 (-) True LOC118965977
XM_036987135.1 mRNA downstream 85015 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA downstream 85015 4880182 ~ 4900797 (-) True rbm46
XM_036987137.1 mRNA downstream 106114 4875082 ~ 4879698 (-) True LOC118965976
XM_036987150.1 mRNA upstream 39506 5058029 ~ 5075839 (-) True LOC110532892
XM_036987153.1 mRNA upstream 175720 5194243 ~ 5241804 (-) False LOC110511386
XM_036987156.1 mRNA upstream 175720 5194243 ~ 5241804 (-) False LOC110511386
XM_036987158.1 mRNA upstream 175720 5194243 ~ 5241804 (-) False LOC110511386
XM_036987157.1 mRNA upstream 175720 5194243 ~ 5241805 (-) False LOC110511386
TU870895 other downstream 409940 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 449733 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 518104 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 665986 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 969403 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 36957 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 278953 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1182846 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1182846 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1233074 6251597 ~ 6256628 (-) True G766640

Expression Profile