RNA id: XM_036987154.1


Basic Information

Item Value
RNA id XM_036987154.1
length 8822
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC110511386
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5194243 ~ 5247622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAAATAACAGAAGTGAAGATGCAGGAACTGTCTTCTTCTGCTCTGACCTAACCAACAGAACCCCGATGATGTtctagaagctgttctagaacagtTTGACACACAACTGATGTGAAAAGTGTTTCAGTGTGGAAATAGACTGGAAACTGACCAAATCGATCAATCGCAGAAATCCAGTCTGCTTTCCAGTTTGATTACTACTGTCCATAGCCCTGTCCCAGGGCGAGCCAGAGAGAAGACCAACCAGTAACcctcctgtgtgtttctcctctccaACTCTTTCAGCTTTGCGTTGCTATTGGATCGTTGCGCTGCTCCCCTTTCCAGCCCGCTGAATCCGATTGGAGGGCTGGGAGTTGGGATCCCGCCCCTGCAGCTCCTCTTAGGCCACGCCTCCCTGCAGCTGGCCCAGCTCGTTACCGCTGCAACCGCCACTTCTGCCGCCAACcaccctacactcaccacctctcGCCTCCTTCATCAACCTCCTCACAGCAGCAGCTACCGTCAATAACATGTCCCGTCCCCTATATAACCCCTTAGGGGATCAGTACTCTTCACAGGCCCAGAGATCTGCCGCCCAGATGGGGCAGTACGGACTCACACAATCCCAGGCAGGAAGGGACCCTCTGGGGGCCTCCCGCCTTGGTCTGgggtctggtggtggtggtggtggttcctCCGGCCAGGGAGGCATGATGTCCTCGATGGTGGCCCAGCAGATGGGGTATAACCCGGGGCAGAGATCGACCGAGATGACCCCGGAGATGGAAACCTCCATAGACCACCACATCCGCGGGGccagagaggaggtgaggctgCTCAGCCAGTTGATGCAGCAAAATAAGAACCAGCAGGTCTCACTGGACGCCCAAGACCTTCGCCTAAGTCGTGACCCCATGGACGAGCTCTCGTCTGGGGGAGGGCTGGGCGGTTACACCCCTGGCCGGACCTCCAGCGACCAGCAAAGTTCCATGGACCCCTGGTCTGGCTTCCTGACCCAGTCTGCTTCCTCCAAACTCTTCTCCTCCACCCTTCCTCAGTACCAAAGCCAAACCTCTGGGTTTGGAGGTGCGGGAGTGCTGGGGTCCACCTCAAGAGGTTCCGAGGCTCCCATGAGCGCCTCGTCCACAGCCTCTCGTCCAGCCCGGTACACGTCCAAGTCCGCCAGCAGCATCCTGGCGAGTTTCGGCTTGTCCAACGAAGACCTGGAGCTCCTCAGCCACTACCCAGACGATCAACTGACCCCAGACAACCTGCCCTTCATCCTCAGAGACATCCGCATCCGTAAGGCCAATAGAACTATGGATGTGGACCCTCGGCCCAAGGTAGGCGGTGGACCTGGCCCAGGGTCCGACCACGGTGGTGGAGGACAGAGCAAAGTGATCGATTACGAACATTCTCGCGCTACTAAATATGACAGTTATGATGATGGCGATAATAGCCAACCCGATAATTACAGCTCGCGCAATCCGCTCCCGAAAGAGAAGGCAAAATATGACATGGTCAGAGACTCGCTGAGCGGGTACGCCGGCCATTCCATGACCTCCGACCTTTCCAAGCAGCGTACCCAACAGCAGCACATCCACAGCCCTGCGGTCCAGAGCCCCATGCCCATGACAGACACAGGCTCTCGCATCGGCCTTCCTCCGCCTTCCAGCCAACCCCAGCAGACCCTCAAAACCCACGGCTCATCCTCTAAAGCGACATCCAAGTCCATGAACATCCCTGTCCGCAGCGGAGACCAAGGACTCAACCGACTCCTGGCGTCCCAGAATCAAGGCAGCGCTCGGGGCCACGCTCAGCCCCGGTCCGGCCTGGTGGTTCTTGGTGGTGGAGATGGAGCTGGGGTTGGAATTCCAGGACTCAGGGTTGGAGGTGTCCCGGTCGGGGTTCCTCCTCCCACGACACCCCCCATTTGGCCTTCCATATTCCCCATCATGAACCCGTCAATCCCACCTCCTGGTCATGTCCCGGTGACTTTTCCTCCGCCCCGGATTGGTCCGATGCCTTCCATGCACCAGCAGATGAACCTACCTCCcccgatgatgatgatgacgaagaGGTTACCGACCCCGACCATGATGAGCGATTACTCCGCAGCTTCTCCCAGATTCTTTCCTCATACCTGTTCTCTCTGTAACATAGAATGTGCCCATCTAAAGAACTGGATCGAGCATCAAAACACCGGTCTCCACGTTGAGAATTGCCGTCTACTTAGTACATCGTATCCCGACTGGAACGTGGAAACTGTAGCTGTATCAAGTAGAAATGAAAGCAGCCAGTTGTCCTCCAAGCGCCGTCGGAGGACACGCTCCGCCTCCCGTTCTTCATCCTggtctcgctctccttctcctcctcctcgcccCTTCTCCTACCACACCCCTTCCTCCTCTACTCGCCGACATCGATCCAGGGAACGATCCCGCGAACGTcgacacaacaccaccacccgGCGTTCCCGGTCTCCGGGTTCACTtcggggcagggagagagaacgTGACCCTCCGGCCTCGTCGTCTTCCCACCGGGATCAGGAACGTCGACCTCAGACAGCCTCTTCATCCCGGAGGTCGCGCTCTAGGAGCTATGAGCGGGAGAGAGCAAGGGAACGTCGGGAGACGACGAGGAGGAGCAGCCTGCCGAAGTCTAACAGTGCTGAGAGACTGGCCAAGAAACTACTGGAGTCatctgCTGGCCTCTCCCTGACGGAGAACACCAGTCTAGAAGTTATGATGCAGTCCCTCGCCCCCGCGCTCCTGGCAGAGCTCGCCAAGAAGAAGGGAGCCGccgcctcctcctcttcctcctcgaagGGAGGTGCCTCTCGGAAAACTGAAACGGGAATGTCCAAGTCGGGAAGCAAGCTCGGATCTGGAAGGTCATCAACCAGGAAATCGTCCTCTCCCTCCAAGTCATCCAGCTCCACTTCTTCCAAGACTAAGAAACGAGGCCCAGGGACCTCAGCTCTGTTAAAACTGATGAATATCCCTCCACGCACAGCTCATGATGAGGTGATGAAGGCCGTAGAACCCTTCGGAAAGATCAACTACATCATCCTGCTCAAGTCCATACAGCAGGCGTCAGTAATGtttgagaaagaggaggatgccAGACTGCTGGCGAGCTGTAAGACCCTGACCATCAAAGGCGAGGTCGTTATCATACGGATGGAGGAAGAGACTCTGCTGGAGGACTCAAAGGAACTGGACCGGGACAAGAAGTCTTCTTCTGAAAGgaaAGCGACAGCAGCCCAGTCCCAGACCAGCACCACCAAGTCAACTAAAACATCTACCAAGTCTTCAACGACCACAACTAAACCGCAAACTGCCGGTACCAAGAACACACCCAAGGTGTGTGGATCTAATACCAAGTCCAAGGGGAAAAGTCCCCTCGGTCCTCAGCAGCCTGACATTGCGAATAATAGGTTTGTGAAGATCGAAGGTTTACCAGAAACTGGATATACAGAGGAAGATGTTCTGGCTCTGGTGAAGCCTTACGGATACAAACCTGGACTCTACAACTGTTTCATTCTGCCCAACCAGAGATGGGCCATAATCCgtatggagagagaacagaagagctTTGCTATGTTGACCAACTACACAGAGTCTCCTCCTAAACTACTAGACTGTCCCCTCACCTTCACGCTGACCCGCCCTGATACAAACCtcctccagGAGGGTGTGTACACCACTCTGAAGGGCCTCACCACTACGGATCCAACGTTGAAGGAACGTCTTCTGATTGTCAGTAACGTCCCCGCAGGGACTGCAGCAGCCCGGGAGGTTCACGACCTCGTCAAACGCTTCGGCTCCTACCTGGACTCGCTGTCTCTGATCAACAGGatcTATTTTGAGATGGAATCGTCGTCGGTGGCAAAGACCGTGTGTCTTCATTTCCAGAAGTTCCCCAGTGTAGTTCAGAACAACCCTCTGAAGTTCAACTTGCTGGTCAAGGATCAACAGGCACCGCAGCCCCCAGCCCAGAAGACATCTGTTGTCAGCACCAAAGCCAAGAAGAAACCAATCAAAGGCAAGAAGCCTGTAGCTAAAGATGTCACAACCCCAGTTAAACCTGTTACTCCCACTACTAAGAGCACCAATGCTACGGTCTCATCCTCTCAGCCTGTTGCTGTGGCGACCAAGCAACCGGGTGACGACGTCATCGTCGCGGAGGCCAAGCAACCAGGAAGTGACGTCGTGGTGATTAATTCCGACGGAAAGGCAACGTTTGCGGAGtctggagagaaagagggtgggatTTCCTCGACGAAAGATGGGAAGAAGAAGAATGCTCATCCTCCcaaagaggatggagggatgaaaacTGAGGAGGAGGCAAAAGGAAACAAAGAAGACACTGCGACCGTCGACATCGTCGTTTCCGCCTCGTTACCTACGGTTGCCATGTCCGCTCCCGAGGAAGAGGTCGCCATGGAAACCCAGAGCACCGACGGCGTTGCCTCGACCAATGAGATTGCAGCAGGACCCAAACAGGTCCTAGCTGCGGTCCCACAACAGGGCAGTGATGTCATTGCGTTGGCTAGTGAAACCGTGACGACTGTGGCCACAATAGAACCTCGTCTGATCTCCGCTGTGGAGGGAGCTGATAACGTGGCCCATCCCGTCGACTCTGACACCGTTGCTGCCTTGGTACAGGCACAAACACCGGCTCCCGTCCCGGTAGAGTTAAATGTTGAAGACAAACCTCAGGACTTTCCTCCGGTCACCGAGGAGATCCTCAAGGCCCTGGAGGCAGCGGTGCACCAACACCGTATGGGGAGACTGGCGGAGGAACAGGCTAAACAGGAACACAACCAGGGAGAGGGGATCCAGGCCAAGCCTCTACCCAACCAGGAGAGCCCTGCAGCTGGGGAGACGGCGGAGAGAAAGACCCCGGCTGAGTCAGAAGAGAAGACTGGGGAGAAAGAGACGACAAAGAAAGAGGAGCCACGACCAGCGAAGAAGTCACAGCCGGACAAAAAGACCACCGACACGAGGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGGCACCTTCAGGAGCTGGTCAACCAGACCACAAGAATGGGAAGACCAAGGCTTCCGGAGGGAGAGGCCGGCGCCTCTCCTCAGAAAGGAGAGCAGACCCGACGGCAGCCCCGCCAAGAAGAAGGGGAAGAAGGggaggaaagaagaggaagacgaaAGGAGCAAGAGCCTCGGTAGCAGCAGTAAAACGACCCTCTCCTCTAGGAGCAGGTCTAAAGACACGTTGCTACGTGGGAGATGAGTTTACGTCTGACGTCATCCCTGGTGAAGCCAACTCCTTCTATCTGGACCAGTTCAACATGGACCAGTTTGTTACTGTGGATGAGGTGAAAGGTGATGAGGCTGAGAACACCAACCCACCGCAGTCATCCTCATCTCCGTCGCACAAGACCCAAGATAAGGCCTCGGAAAGGTCAAAACGATCGTCCAAACGCAGGAGGGGTACCCCAGATACCCCATCTCCAAAATCTAGCCTGGAGCACAAGGAGACACCCAcgtcctcctcctctaccccccctgcTCAGAAGACTCCACGAAAAGCCGCAGCAAAAAAGGCAGCAGCTAAACCTCAACCACCTGCCACCTCTGGACGCAAGACCAGGTCATCAGCAGCTGTTGTTGTAGCAACCGAAGCCGCAGAAACCCAGGAAGCTGCCGACGACAACACCAGCATAGCCGATACGGAGGCGGAGCCTGTTCCCTTGGAGACTCGGTCTCAGTCGGAAGAGGAAGTCGTAGTGGTCACTAAGGGATGTGACACGGAGGATGTAGTACCGTCATCCCACCACAAGATGTCAGTGTTGGACACTGCAGTGACCGACAACAAGGAAGAGAAAAGTGCTGTGTCAGAAAGCGATATGGAGACGACCGCTGAAAAACCTCCAGAGCTAGAGGGGAGCGAGGAGACGACCCAGGCTGAAAAAGGTTCCTCGATTCTGGGTACCGAGGCTCAGAATGGAGCCTGTCCCCTGGAGCTTGGTCTGACCCATCCTTCTGCCTCAGCCAAGGAGCGAAACCTTCAGAAGGCCCTGCAACTACAAGAGGTGGAGACGGTGTCGGGTCACCAGGTGCCCCAATCCCTTATTGATAAAGTacctgatgatgatggtgatttcCAGATACTCGACGAAGCTGTGGACGATGACACACCTAGAGACGGAGAAGAGGGCAGTCAAGACACTCAAGAACAGTCTGGATCTCTATCTCTGGGTTACCAGGCGCCTACAGCCTCCGAATCTACAGGTTCTCAGGTGCCTCAAGCTACACTAGAGGAACACGAAGAGATCACCAACGACGAAGAAGAAGAATCTGCATTCCAGATCCTCGACTCTCTCGGCCAAGGGGGCCGAAGAGATTCTCTacccagagagatggaggggttccAGATACTAGATTCAGTCGATGATCAGACGGAAACGACACAAGTTCTGGACAACCATACGACCGACTCTAAATGTCAGGGGGGCTCCAAGCCTCTAAAGGGGGGTAAGAAGACACCCCAAAAGAAGGGGAAAAAGGAGATTAAGAAGGTATCCAAAACTCAAGAGGTGACCAAGACCCCAACAGGAGAGTCCGAGGGGGGTACCCCGAAAAAGAGTAACCTTGTCACCTTGGATGAGgtgagcgaggaggaggaggattacccAGATGACGCCGCCGAAGAGGAAGAACTTATTAAGAAACAACAactggtgaaggagaagcagcgagagaaggacagagggaaggagagagagaaagggcggaggaggagtagagagaaggaacggacgagggaggaggagagagaggagagggtcggAGTGGATACTGAGGGCTTGGTGACTTTGGATGAGATCGGAGAGGACGAAGGAGCGGAGGGGCCTTGCCTGGAGTCAGGAGACACCTTCAACCCAGAGACTCTGGTAACCCTGGATGAGGCTGGAGGTGATGGGGAGGATGATGAGATGGAGGAAGAGCAGAACAAGAGTCCTGAACCAGCGCAGAACCAGCAAGCTGACCACacagCTGATGCTACAGGGTCTCCTGGTGCAGAGGACGACGGCAGGGGCATGGAGGAAATCAGGAGAATGGACTTTGTGACCGTGGAtgaagtgggagaggaggaggaggaggctgttaccacaaggagaggagccagggggaggaagagggccCGACAGACCTCTGCCAGGAAACCAGTGAAGGTGAAGAAGGTGAGCGTCAAAgacaaggaagaggaggagcctcGGGCAGATACGACTCCTCCCACTGACACAGCTTCCGTTGACGCTCCCTCCTCATTGCTCCAAGTCGCTGTGACCTCAGAGGGGGACGCCCAACCAGCTGCCTCGGTCCCAGACCtccaggagaaagagagggaggctgATACCCCGGCAGACCAACCCAGCCTGGAGGCCTCCTCAGCAGggcaggagaggcagacggaCCCCCCTGAGAACCAGAGTCTGGAGGGGAAACAGGAGACGACAGATATCAGTGCTGGAAAGACTTGGACTGACTCCACGACACCACAAGaagacagtgaacagagaagagaggaggaagaggagcctGAATTAAAACGTTGTCGTTCTGAGTCTCCTCTGATCACAGACTTCAAACTGCCTCCCTTCAGCCCTCACAACCCTATAGgccaGGACTTTGTGGTTCCTAAGACAGGGTTCTTCTGTAAGTTGTGTTCTCTGTTCTACGGGAGCGAACACACAGCCAAGAAGACCCACTGCAGCAGTCTGCAACACTATCAGAACATGCAGaaATATTACCTGGAAGGAAGTACCGTCTCCAAATGACCCCCTTGACCCTggatgtttcccaaatggcaccctatcccctacatagtgcactactttagaccagagccccgtAGTGCTGCCATTTGACTCCCAACTCAATCAATCTATATTTTCTAATTTGTTTGTCTGAAACAACTGTAAGTCTGGTCATAATACGACACTCTATGGGGAGACAGAGGATCTGAGTACAGGAGTGTTGATCCAGGATCAgtcccccccccagtccatatagttatagatcagtccgcccccccccccccaagtccatatagttatagatcagtcccccccaccagtccatatagttatagatcagtacccccccccccccagtccatatagttatagatcagtcccccccgccagtccatatagttatagatcagtaccccccccccccagtccatatagttatagatcagtccCCCCCCAGTCCATGTAGTTATAGATCAGTCCCCCCCgccagtccatatagttatagatcagtccccccccccagtccatatagttatagatcagtccATATAGTTATGATCTTACAGGCTGATCCAGGATCAGTCCTCCTCCTCTGAAaggctttgtgaatatgggccccaAAGTATCAAAACAGTTTCATGGTTTGtgttttttgtggggggggggggggtgtatttggATGTCTGTTTTAATTTAAGAAGCgtggtcatgttttggaggatgcacaACTTTGACCTTCGACCTCCCGTTGGTTGAGTTGCAGCGATGACACAAGATTGAacttggggagaaaaagggggatttaaaaaaaatgtattataacACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871492 lncRNA downstream 3449 5189767 ~ 5190794 (-) True G765539
TU871473 lncRNA downstream 11220 5182140 ~ 5183023 (-) True G765529
TU871269 lncRNA downstream 47630 5146313 ~ 5146613 (-) True G765377
TU871230 lncRNA downstream 146741 5045535 ~ 5047502 (-) True G765343
TU871202 lncRNA downstream 175787 5017272 ~ 5018456 (-) True LOC110518233
TU871522 lncRNA upstream 13790 5261339 ~ 5261974 (-) True G765563
TU871550 lncRNA upstream 107257 5354806 ~ 5387716 (-) True G765583
TU871577 lncRNA upstream 123024 5370573 ~ 5371639 (-) True G765603
TU871579 lncRNA upstream 131989 5379538 ~ 5379941 (-) True G765605
TU871545 lncRNA upstream 141374 5388923 ~ 5393253 (-) False G765581
XM_036987150.1 mRNA downstream 118404 5058029 ~ 5075839 (-) True LOC110532892
XM_036987145.1 mRNA downstream 175720 4985812 ~ 5018523 (-) False LOC110518233
XM_036989236.1 mRNA upstream 565874 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 735223 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 818947 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 818947 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 818947 6066496 ~ 6190414 (-) False exoc6b
TU871235 other downstream 136921 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 618371 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 658164 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 726535 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 874417 4290795 ~ 4319826 (-) True G765059
TU871540 other upstream 49927 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 953820 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 953820 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1004048 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 1093072 6340621 ~ 6362814 (-) False G766665

Expression Profile