RNA id: XM_036987160.1


Basic Information

Item Value
RNA id XM_036987160.1
length 9316
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC110511386
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5194243 ~ 5247622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttaactgacttgcctagttaaataaaggtaaaattaaaaatgtaaacgACCAAGTCCAAacactgtttttttcccccatatTTAGTAGACAATTCAATGTTTGTCCCCGTCCTCGTGGTAACATGGCGTTATTCCCCGTCCCCGTGGTAACATGGCGTTATTCCGCGTCCCCGTGGTAACCTCGCAGACAATCCATTTAGACCAGGTGTTTGAAATGTGTGCTCTTTCCCAGCTATTAAAAGGCGGCTATTTAAGAGATCTATTTAAGAGATCTATTTAAGAGATCTATTTAAGAGGCTTTTCATTGGAAGTTTGACGGAGTGTGTTTCCCACCATTTTAATATGTTGCTGTTATAGAAGTTGTTGGTTTCATtgcttaatgatgatgatgatgatgatgatgacgataatAATAAAATGTTTGCTGTTTAAATATTTAGGTTTTCCATCAGGTCTTATAGGGCCTCGTTCCACTCGTGGTCACTGCAACGTTATAGAATAATCTATCGACATTATTGCGTAAGcgcaattttatttttattttacatagTTATGCCAGGATTGGACTTGTTTTTGGTATTGTCAAATGCAGTAGTTTGGGGCACGTGGTCAGCTCTGTTATCAGCTGATCTCTCTGTGTTTAATCACACGTGAAAACATCTACAGCCTTCCTATCAGTATAGAATATCCTGATGCAAAGATACATGAACATGATTCATATATACGAAGCCAATCACAGTAGGAAACTGTTTAAAATCCAGGCTCGGGTACGGGTTCTCCTTGCACCTATTTTACCCACTATCTTTCTCTGCGGGTGGTGGTGATGGGTTCCCTTCTCTCAAAACTGGTTTTTATGAAGCAGGTTTTTGAAGTTCAGCTTTCATGTCTCAACGCTTTGCACCATGACGTTAACCACTTTGAATATAAACACGCTGTTAAGAATATTTTCTCGTCAACATTATCGGACAGTGTATTAGTGTGGGTTAGAGACATGAATTGGTTTAGTTGACTCTCAAGTGCAGTGTTCTGTTTGGTTATACAACTTTCAGATCGTTGTCTTATGAAGTTCCGTTACAACTAATCCTGACACCGTTTCTTAATTTATGCATCCACGTAACCTTTCACATTTTGATTCGGTAATCAATAGCTTACACTTAACCCTACTAAATCTGATCTTTAGCGAAACTAGTTAAGCCCCGTTTCATTACTGAATAAACTATTTCCCTTGGCAGTCTATTATCTTAAAAGTATGACTGAAAACTTTTTGTAAaccttttgtttaaaaaaaagctaCTTGCATTCTTGCAAATTTCACTAAAGCAGTGCATGGAGTTTGTAaaataatgttgtatgtttttcacGATGACTACTTCTCCCCCTCCTGTCTGTTCCCTGTTTGCTTGCTGTTTTTCTTTCCCCCAGTGAAGATGCAGGAACTGTCTTCTTCTGCTCTGACCTAACCAACAGAACCCCGATGATGTtctagaagctgttctagaacagtTTGACACACAACTGATGTGAAAAGTGTTTCAGTGTGGAAATAGACTGGAAACTGACCAAATCGATCAATCGCAGAAATCCAGTCTGCTTTCCAGTTTGATTACTACTGTCCATAGCCCTGTCCCAGGGCGAGCCAGAGAGAAGACCAACCAGTAACcctcctgtgtgtttctcctctccaACTCTTTCAGCTTTGCGTTGCTATTGGATCGTTGCGCTGCTCCCCTTTCCAGCCCGCTGAATCCGATTGGAGGGCTGGGAGTTGGGATCCCGCCCCTGCAGCTCCTCTTAGGCCACGCCTCCCTGCAGCTGGCCCAGCTCGTTACCGCTGCAACCGCCACTTCTGCCGCCAACcaccctacactcaccacctctcGCCTCCTTCATCAACCTCCTCACAGCAGCAGCTACCGTCAATAACATGTCCCGTCCCCTATATAACCCCTTAGGGGATCAGTACTCTTCACAGGCCCAGAGATCTGCCGCCCAGATGGGGCAGTACGGACTCACACAATCCCAGGCAGGAAGGGACCCTCTGGGGGCCTCCCGCCTTGGTCTGgggtctggtggtggtggtggtggttcctCCGGCCAGGGAGGCATGATGTCCTCGATGGTGGCCCAGCAGATGGGGTATAACCCGGGGCAGAGATCGACCGAGATGACCCCGGAGATGGAAACCTCCATAGACCACCACATCCGCGGGGccagagaggaggtgaggctgCTCAGCCAGTTGATGCAGCAAAATAAGAACCAGCAGGTCTCACTGGACGCCCAAGACCTTCGCCTAAGTCGTGACCCCATGGACGAGCTCTCGTCTGGGGGAGGGCTGGGCGGTTACACCCCTGGCCGGACCTCCAGCGACCAGCAAAGTTCCATGGACCCCTGGTCTGGCTTCCTGACCCAGTCTGCTTCCTCCAAACTCTTCTCCTCCACCCTTCCTCAGTACCAAAGCCAAACCTCTGGGTTTGGAGGTGCGGGAGTGCTGGGGTCCACCTCAAGAGGTTCCGAGGCTCCCATGAGCGCCTCGTCCACAGCCTCTCGTCCAGCCCGGTACACGTCCAAGTCCGCCAGCAGCATCCTGGCGAGTTTCGGCTTGTCCAACGAAGACCTGGAGCTCCTCAGCCACTACCCAGACGATCAACTGACCCCAGACAACCTGCCCTTCATCCTCAGAGACATCCGCATCCGTAAGGCCAATAGAACTATGGATGTGGACCCTCGGCCCAAGGTAGGCGGTGGACCTGGCCCAGGGTCCGACCACGGTGGTGGAGGACAGAGCAAAGTGATCGATTACGAACATTCTCGCGCTACTAAATATGACAGTTATGATGATGGCGATAATAGCCAACCCGATAATTACAGCTCGCGCAATCCGCTCCCGAAAGAGAAGGCAAAATATGACATGGTCAGAGACTCGCTGAGCGGGTACGCCGGCCATTCCATGACCTCCGACCTTTCCAAGCAGCGTACCCAACAGCAGCACATCCACAGCCCTGCGGTCCAGAGCCCCATGCCCATGACAGACACAGGCTCTCGCATCGGCCTTCCTCCGCCTTCCAGCCAACCCCAGCAGACCCTCAAAACCCACGGCTCATCCTCTAAAGCGACATCCAAGTCCATGAACATCCCTGTCCGCAGCGGAGACCAAGGACTCAACCGACTCCTGGCGTCCCAGAATCAAGGCAGCGCTCGGGGCCACGCTCAGCCCCGGTCCGGCCTGGTGGTTCTTGGTGGTGGAGATGGAGCTGGGGTTGGAATTCCAGGACTCAGGGTTGGAGGTGTCCCGGTCGGGGTTCCTCCTCCCACGACACCCCCCATTTGGCCTTCCATATTCCCCATCATGAACCCGTCAATCCCACCTCCTGGTCATGTCCCGGTGACTTTTCCTCCGCCCCGGATTGGTCCGATGCCTTCCATGCACCAGCAGATGAACCTACCTCCcccgatgatgatgatgacgaagaGGTTACCGACCCCGACCATGATGAGCGATTACTCCGCAGCTTCTCCCAGATTCTTTCCTCATACCTGTTCTCTCTGTAACATAGAATGTGCCCATCTAAAGAACTGGATCGAGCATCAAAACACCGGTCTCCACGTTGAGAATTGCCGTCTACTTAGTACATCGTATCCCGACTGGAACGTGGAAACTGTAGCTGTATCAAGTAGAAATGAAAGCAGCCAGTTGTCCTCCAAGCGCCGTCGGAGGACACGCTCCGCCTCCCGTTCTTCATCCTggtctcgctctccttctcctcctcctcgcccCTTCTCCTACCACACCCCTTCCTCCTCTACTCGCCGACATCGATCCAGGGAACGATCCCGCGAACGTcgacacaacaccaccacccgGCGTTCCCGGTCTCCGGGTTCACTtcggggcagggagagagaacgTGACCCTCCGGCCTCGTCGTCTTCCCACCGGGATCAGGAACGTCGACCTCAGACAGCCTCTTCATCCCGGAGGTCGCGCTCTAGGAGCTATGAGCGGGAGAGAGCAAGGGAACGTCGGGAGACGACGAGGAGGAGCAGCCTGCCGAAGTCTAACAGTGCTGAGAGACTGGCCAAGAAACTACTGGAGTCatctgCTGGCCTCTCCCTGACGGAGAACACCAGTCTAGAAGTTATGATGCAGTCCCTCGCCCCCGCGCTCCTGGCAGAGCTCGCCAAGAAGAAGGGAGCCGccgcctcctcctcttcctcctcgaagGGAGGTGCCTCTCGGAAAACTGAAACGGGAATGTCCAAGTCGGGAAGCAAGCTCGGATCTGGAAGGTCATCAACCAGGAAATCGTCCTCTCCCTCCAAGTCATCCAGCTCCACTTCTTCCAAGACTAAGAAACGAGGCCCAGGGACCTCAGCTCTGTTAAAACTGATGAATATCCCTCCACGCACAGCTCATGATGAGGTGATGAAGGCCGTAGAACCCTTCGGAAAGATCAACTACATCATCCTGCTCAAGTCCATACAGCAGGCGTCAGTAATGtttgagaaagaggaggatgccAGACTGCTGGCGAGCTGTAAGACCCTGACCATCAAAGGCGAGGTCGTTATCATACGGATGGAGGAAGAGACTCTGCTGGAGGACTCAAAGGAACTGGACCGGGACAAGAAGTCTTCTTCTGAAAGgaaAGCGACAGCAGCCCAGTCCCAGACCAGCACCACCAAGTCAACTAAAACATCTACCAAGTCTTCAACGACCACAACTAAACCGCAAACTGCCGGTACCAAGAACACACCCAAGGTGTGTGGATCTAATACCAAGTCCAAGGGGAAAAGTCCCCTCGGTCCTCAGCAGCCTGACATTGCGAATAATAGGTTTGTGAAGATCGAAGGTTTACCAGAAACTGGATATACAGAGGAAGATGTTCTGGCTCTGGTGAAGCCTTACGGATACAAACCTGGACTCTACAACTGTTTCATTCTGCCCAACCAGAGATGGGCCATAATCCgtatggagagagaacagaagagctTTGCTATGTTGACCAACTACACAGAGTCTCCTCCTAAACTACTAGACTGTCCCCTCACCTTCACGCTGACCCGCCCTGATACAAACCtcctccagGAGGGTGTGTACACCACTCTGAAGGGCCTCACCACTACGGATCCAACGTTGAAGGAACGTCTTCTGATTGTCAGTAACGTCCCCGCAGGGACTGCAGCAGCCCGGGAGGTTCACGACCTCGTCAAACGCTTCGGCTCCTACCTGGACTCGCTGTCTCTGATCAACAGGatcTATTTTGAGATGGAATCGTCGTCGGTGGCAAAGACCGTGTGTCTTCATTTCCAGAAGTTCCCCAGTGTAGTTCAGAACAACCCTCTGAAGTTCAACTTGCTGGTCAAGGATCAACAGGCACCGCAGCCCCCAGCCCAGAAGACATCTGTTGTCAGCACCAAAGCCAAGAAGAAACCAATCAAAGGCAAGAAGCCTGTAGCTAAAGATGTCACAACCCCAGTTAAACCTGTTACTCCCACTACTAAGAGCACCAATGCTACGGTCTCATCCTCTCAGCCTGTTGCTGTGGCGACCAAGCAACCGGGTGACGACGTCATCGTCGCGGAGGCCAAGCAACCAGGAAGTGACGTCGTGGTGATTAATTCCGACGGAAAGGCAACGTTTGCGGAGtctggagagaaagagggtgggatTTCCTCGACGAAAGATGGGAAGAAGAAGAATGCTCATCCTCCcaaagaggatggagggatgaaaacTGAGGAGGAGGCAAAAGGAAACAAAGAAGACACTGCGACCGTCGACATCGTCGTTTCCGCCTCGTTACCTACGGTTGCCATGTCCGCTCCCGAGGAAGAGGTCGCCATGGAAACCCAGAGCACCGACGGCGTTGCCTCGACCAATGAGATTGCAGCAGGACCCAAACAGGTCCTAGCTGCGGTCCCACAACAGGGCAGTGATGTCATTGCGTTGGCTAGTGAAACCGTGACGACTGTGGCCACAATAGAACCTCGTCTGATCTCCGCTGTGGAGGGAGCTGATAACGTGGCCCATCCCGTCGACTCTGACACCGTTGCTGCCTTGGTACAGGCACAAACACCGGCTCCCGTCCCGGTAGAGTTAAATGTTGAAGACAAACCTCAGGACTTTCCTCCGGTCACCGAGGAGATCCTCAAGGCCCTGGAGGCAGCGGTGCACCAACACCGTATGGGGAGACTGGCGGAGGAACAGGCTAAACAGGAACACAACCAGGGAGAGGGGATCCAGGCCAAGCCTCTACCCAACCAGGAGAGCCCTGCAGCTGGGGAGACGGCGGAGAGAAAGACCCCGGCTGAGTCAGAAGAGAAGACTGGGGAGAAAGAGACGACAAAGAAAGAGGAGCCACGACCAGCGAAGAAGTCACAGCCGGACAAAAAGACCACCGACACGAGGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGACACCTTCAGGATCTGGCCAACCAGACCACAAGAAGACCACCGACACGAAGAAGGCACCTTCAGGAGCTGGTCAACCAGACCACAAGAATGGGAAGACCAAGGCTTCCGGAGGGAGAGGCCGGCGCCTCTCCTCAGAAAGGAGAGCAGACCCGACGGCAGCCCCGCCAAGAAGAAGGGGAAGAAGGggaggaaagaagaggaagacgaaAGGAGCAAGAGCCTCGGTAGCAGCAGTAAAACGACCCTCTCCTCTAGGAGCAGGTCTAAAGACACGTTGCTACGTGGGAGATGAGTTTACGTCTGACGTCATCCCTGGTGAAGCCAACTCCTTCTATCTGGACCAGTTCAACATGGACCAGTTTGTTACTGTGGATGAGGTGAAAGGTGATGAGGCTGAGAACACCAACCCACCGCAGTCATCCTCATCTCCGTCGCACAAGACCCAAGATAAGGCCTCGGAAAGGTCAAAACGATCGTCCAAACGCAGGAGGGGTACCCCAGATACCCCATCTCCAAAATCTAGCCTGGAGCACAAGGAGACACCCAcgtcctcctcctctaccccccctgcTCAGAAGACTCCACGAAAAGCCGCAGCAAAAAAGGCAGCAGCTAAACCTCAACCACCTGCCACCTCTGGACGCAAGACCAGGTCATCAGCAGCTGTTGTTGTAGCAACCGAAGCCGCAGAAACCCAGGAAGCTGCCGACGACAACACCAGCATAGCCGATACGGAGGCGGAGCCTGTTCCCTTGGAGACTCGGTCTCAGTCGGAAGAGGAAGTCGTAGTGGTCACTAAGGGATGTGACACGGAGGATGTAGTACCGTCATCCCACCACAAGATGTCAGTGTTGGACACTGCAGTGACCGACAACAAGGAAGAGAAAAGTGCTGTGTCAGAAAGCGATATGGAGACGACCGCTGAAAAACCTCCAGAGCTAGAGGGGAGCGAGGAGACGACCCAGGCTGAAAAAGGTTCCTCGATTCTGGGTACCGAGGCTCAGAATGGAGCCTGTCCCCTGGAGCTTGGTCTGACCCATCCTTCTGCCTCAGCCAAGGAGCGAAACCTTCAGAAGGCCCTGCAACTACAAGAGGTGGAGACGGTGTCGGGTCACCAGGTGCCCCAATCCCTTATTGATAAAGTacctgatgatgatggtgatttcCAGATACTCGACGAAGCTGTGGACGATGACACACCTAGAGACGGAGAAGAGGGCAGTCAAGACACTCAAGAACAGTCTGGATCTCTATCTCTGGGTTACCAGGCGCCTACAGCCTCCGAATCTACAGGTTCTCAGGTGCCTCAAGCTACACTAGAGGAACACGAAGAGATCACCAACGACGAAGAAGAAGAATCTGCATTCCAGATCCTCGACTCTCTCGGCCAAGGGGGCCGAAGAGATTCTCTacccagagagatggaggggttccAGATACTAGATTCAGTCGATGATCAGACGGAAACGACACAAGTTCTGGACAACCATACGACCGACTCTAAATGTCAGGGGGGCTCCAAGCCTCTAAAGGGGGGTAAGAAGACACCCCAAAAGAAGGGGAAAAAGGAGATTAAGAAGGTATCCAAAACTCAAGAGGTGACCAAGACCCCAACAGGAGAGTCCGAGGGGGGTACCCCGAAAAAGAGTAACCTTGTCACCTTGGATGAGgtgagcgaggaggaggaggattacccAGATGACGCCGCCGAAGAGGAAGAACTTATTAAGAAACAACAactggtgaaggagaagcagcgagagaaggacagagggaaggagagagagaaagggcggaggaggagtagagagaaggaacggacgagggaggaggagagagaggagagggtcggAGTGGATACTGAGGGCTTGGTGACTTTGGATGAGATCGGAGAGGACGAAGGAGCGGAGGGGCCTTGCCTGGAGTCAGGAGACACCTTCAACCCAGAGACTCTGGTAACCCTGGATGAGGCTGGAGGTGATGGGGAGGATGATGAGATGGAGGAAGAGCAGAACAAGAGTCCTGAACCAGCGCAGAACCAGCAAGCTGACCACacagCTGATGCTACAGGGTCTCCTGGTGCAGAGGACGACGGCAGGGGCATGGAGGAAATCAGGAGAATGGACTTTGTGACCGTGGAtgaagtgggagaggaggaggaggaggctgttaccacaaggagaggagccagggggaggaagagggccCGACAGACCTCTGCCAGGAAACCAGTGAAGGTGAAGAAGGTGAGCGTCAAAgacaaggaagaggaggagcctcGGGCAGATACGACTCCTCCCACTGACACAGCTTCCGTTGACGCTCCCTCCTCATTGCTCCAAGTCGCTGTGACCTCAGAGGGGGACGCCCAACCAGCTGCCTCGGTCCCAGACCtccaggagaaagagagggaggctgATACCCCGGCAGACCAACCCAGCCTGGAGGCCTCCTCAGCAGggcaggagaggcagacggaCCCCCCTGAGAACCAGAGTCTGGAGGGGAAACAGGAGACGACAGATATCAGTGCTGGAAAGACTTGGACTGACTCCACGACACCACAAGGCGGTATGAATATCAGGTCGTCCCCGGATGTCCCTAATGGCCACGTGGTCATGAAGACGTGTGTTTGATAGGAACGTAATGACATGATATCTGGACTCTGTTCTTGCTGCCAAATTAATCTGTTTTCTCCCTTCGCCTTTGTTCTtcctgactccctctctctctctc

Function

GO: NA

KEGG:

id description
K24692 ZNF638; zinc finger protein 638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871492 lncRNA downstream 6820 5189767 ~ 5190794 (-) True G765539
TU871473 lncRNA downstream 14591 5182140 ~ 5183023 (-) True G765529
TU871269 lncRNA downstream 51001 5146313 ~ 5146613 (-) True G765377
TU871230 lncRNA downstream 150112 5045535 ~ 5047502 (-) True G765343
TU871202 lncRNA downstream 179158 5017272 ~ 5018456 (-) True LOC110518233
TU871522 lncRNA upstream 19532 5261339 ~ 5261974 (-) True G765563
TU871550 lncRNA upstream 112999 5354806 ~ 5387716 (-) True G765583
TU871577 lncRNA upstream 128766 5370573 ~ 5371639 (-) True G765603
TU871579 lncRNA upstream 137731 5379538 ~ 5379941 (-) True G765605
TU871545 lncRNA upstream 147116 5388923 ~ 5393253 (-) False G765581
XM_036987150.1 mRNA downstream 121775 5058029 ~ 5075839 (-) True LOC110532892
XM_036987145.1 mRNA downstream 179091 4985812 ~ 5018523 (-) False LOC110518233
XM_036989236.1 mRNA upstream 571616 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 740965 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 824689 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 824689 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 824689 6066496 ~ 6190414 (-) False exoc6b
TU871235 other downstream 140292 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 621742 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 661535 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 729906 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 877788 4290795 ~ 4319826 (-) True G765059
TU871540 other upstream 55669 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 959562 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 959562 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1009790 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 1098814 6340621 ~ 6362814 (-) False G766665

Expression Profile