RNA id: XM_036987197.1


Basic Information

Item Value
RNA id XM_036987197.1
length 5039
RNA type mRNA
GC content 0.49
exon number 34
gene id LOC110510780
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6636026 ~ 6834904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctTTTCCCCCCTCACTCTTACTCACTgaatctctccttccttctcgcTCTGTCCTGCGTGCTCCCCCCTTTCTCAAAAACAtgaaggaagaaagagaagaatcCGGCTGGACGAGTGTGGAGAAGGGAAAGTTTGAGGACAGCTTTTAAAAGaaaacgaaagagagagagggagacactaATATGCGGATGGAATGAAGATAGGGTGCTTTATAGCCATTCAACGCAATTAAGCGAGACATACGGGCTGTGCACAAGAACGCAGTTACTCGACTTTTCTCAACGTGAGACTTTTAGAATCATTTTAGGATAGATGAATACTCAAACCTCGACTATTAAGACACAAATTATCGTATTTACTAAGTCCTAGAGCAGCTTCATGAGCTGCAAGTCACAGCTCATCCCGGAAAAGGACTTAGCCCCGAGGACCAAGGGGCAGTGACTAGGGCAGGTCGCCGCACCCGGAGTTTAGGCGTTGCCACACGGCGTTGACCCGGAGCCATGGCAGGGGCGAAGCCCGGAGTCCACGCTCTACAGCTCAAACCTGTGTCGGTTCACGACATACTAAAACGGGGCAGCAAGTTTATCAAATGGGACGAGgagcccAACAGCGGTCACCCAACCCTCATCACTCTGAAGGTGGACCCAGATGGATTCTTCCTTTACTGGACTGGTGGGGCCAACATGgaGGTGGAGATTCTGGATATCAGCCAGATCAGAGACACCAGAACTGGGAAGTTTGCCAAACTACCAAAGGATGCACGTGTCAGAGAGGTGCTGGGATTGGGTACACCAGGCGAGGGCGGCGTTGCCGTGGAGGGCAAGCTGGTAACGGTCGTCCACGGCAACGATCTGGTCAACGTATCCTTCCTCAACTTCCAGGCCATGCAGGAAGACACCGCCAAGgtgtggaCAGAGGAGCTCTTTAAACTAGCCACAAACATTCTGTCCCAGAATGCATCTCGCAACACCTTCCTCCTCAAAGCatacACCAAGTTAAAGTTGCAGGTGAATCAAGATGGAAAGATTCCAGTGAAGAACATTCTGAAGATGTTCTCTGACAAGAAGAGAGTGGAGACCGCACTGGAACAGTGCGGTCTGGTCACCAACAAGgCAGAGGGCATTAAGCCAGACGACTTTACTTGTGATATGTTCCAGAGCTTTCTCCACAGTCTCTGTCTCCGACCTGAGATAGAACGCATCTTCGTAGAGCTtgGTTCTAAGGGGAAGCCCTTCCTCTCCCTGGATCAGTTGACAGACTTTATAAACCGTCGTCAGAGAGACTCTCGTCTCAACGAGGTGCTGTATCCTCCGCTGAAGAGAGAGCAGATCAGACAACTGATGGAGAAATACCAGAGCAATGCCAGCCAgctggagagagatcAGATCAGTCTGATGGGGTTCAGCAGGTatctaggaggagaggagaattcCATGGTCCCTCCAGAGAGACTGGACATCATAGATGATATGAACCAGCCCCTGTCCCACTACTTTATCAACTCTTCCCACAACACCTAcctcacagttGGTCAGCTGACAGGTCTGTCTTCGGTGGAGATGTATCGCCAGGTGTTACTGACCGGTTGTCGCTGTATAGAGCTGGACTGTTGGAAGGGACGGCCGCAGGACGAGGAACCTTACATCACACACGGCTTCACCATGACCACAGAGATACccttcaaggaGGTGATTGAAGCGATAGCAGAAAGTGCGTTCAAGGCCTCTCCctatcccctcatcctctccttcgAAAACCATGTTGACTCGGCGAAGCAGCAGGCCAAGATGGCGGAGTATTGTCAAAGTATCTTTGGAGACGCCCTTCTCATCGACCCTCTGGAGAAATACCCGCTGATCCCAGCTCAGCCCTTACCGTCGCCCCAGGAGCTGCTGGGAAAGATCTTGatcaaaaacaagaagaagcaccACCACAGAGCGTCCACCAGGGGCAGTCTGAGGAGGAGGACCGGAGAGACGGACAGTCCTGGGCAGGCTTCACCTCTTAACGacTGCCGTTTCAGTGACAGTGATGGAGGCCAGCTGCTATCCAATGGGGAAGAGAGGCTGGCAGACAGGCTGGTTAAAGACGGAGATCCTCGCAAATCTATTGgaggggagggagaaagtgatgatgaggaggaggaagaggaaccaGTGGCTGAACTGAAGAAACCAAACTCTGATGAGgGTACTGCTAGTAGTGAGGTGAACGCAACAGAGGAGATGTCTACTCTGGTCAACTACATAGAACCTGTCAAGTTCAAGAGCTTTGAGGTCGCaaacaagaggaATAAGTATTTTGAGATGTCGTCCTTCGTTGAGACTAAGGGTATGGACACCCTGAAGAGTGCCCCCATTGAGTTTGTTGAGTACAATAAGAAGCAGCTGAGTCGTATCTATCCCAAGGGCACCAGGGTAGACAGTTCCAACTACATGCCTCAACTCTTCTGGAACGTCGGCTGTCAGATGGTGGCATTGAACTTCCAGACTCTTGaCCTGCCCATGCAGTTGAACATGGGAGTATTTGAGTATAATGGCCACAGTGGCTACCTGCTGAAACCAGAGTTCATGAGAAGGACAGACAAACACTTTGACCCCTTCACTGAAAACATTGTGGACGGCATCGTAGCCAACACCGTGAAGATcagggtGATCTCGGGTCAGTTCCTGACCGATAAGAAAGTGGGCGTGTACGTGGAAGTGGACATGTTTGGACTTCCTGCCGACACAAAGAGGAAGTATCGCACCAGGACATCCAATGGGAACAGCCTGGACCCTGTCTGGGATGACGAGACATTTGTCTTCAACAAGgtGGTCCTCCCCACCTTGGCCTCTTTGCGGATTGCTGTGTTTGAAGAGAATGGGAAGTTCCTGGGACATCGGATCTGTCCTGTGTCAACTATCCGCCCCGgttaccACTACATCAGCCTGAAGAACGAGATGAATCAACCTCTGATGCTGCCCTCCCTCCTGGTCTACACCGAGGCTCAAGACTACGTTCCTAATGAACACCAGGAGTATGCAGAAGCATTGACCAACCCCATGAAACATTACAGTCTCCTggtccagagagacagacagctggcGTCTCTGATGGAGGACAACAGTGAGagtgttttTGAGCAGCCAAAGGAGGGAGGGCCGAATTTGGAAGGTGACGCCCCTCTTGTGAagatcccctcccccctccatcccgcCCCCGTCGATGACATCGTTGACCTCACCAGCTCACCTGGTCCAGGCCAGAAAGAGGATCTTATTGCCATAGTCCTGACAAatCTCCAGGCTCAGTCTATTGAAGAGCTGAAACAGCAGAGGTCATATCTGAAGCTGTTTAACAAACAGTGTAAAGAACTCCAAGAGCTCCGTAAGAAACACCTGAAGAAGgtATGGTCCCTGAGTAAGGAACAGAAGAGTCGCTTTAGCCAGCTCCACTCTGACACACAGAAACAACGCAGTCAGATGGAGAAACACCTGAAATCCAGCATGAAGAAGAAggagtCAGCAGAGCCGGTGCAGAGGCAGCTGACAGCGTTGGAGGCGGAGCTACAGAAACAGACAGTGCAGCTCAGGGAGTGGCAGATGGAGGAGCTTCTCAAACTACGACAAGAACAACACTCactggagagaaagaagagacacacacacctacaagagCTGTCTCGGAAACTAGAGGAGACGGCCCAGGAATGCCAGCCGGCTCAACTGAAAAACCTCAAGGACATCTGTGCTAGAGAGAAGAAGGAGCTTCAGAAGATTctagacaggaagagacagaacagcATCACCGAGGCCAAGAGCAGAGACCGAGACAAGGCCGAgtcgGAACAGAATGAGATCAACAGGAAGCATATCTCAGACTCTGTCACTTTAATCCGCCGGttggatGAGGCCCAGTTAAGGCGTCAGGAGAAGTTGGTCGTTGGTCAGAGAGAAGTCCTACGGCACATAGAGGAGGAGAAACcactgCTGAAGGCCCGGTTGGAGCAGGACTTTGTGATGGAGCTCCAACGTCTACCTGAGGAGATCTGCCAATATCTGCAGACGGTCCTGGAGTCCAAAGGTCTCTGCAGCGACGCCCTCTTTTCCTTATCCAATCATAGCAGCCCCAGCTCCAGCTCAGGCACGCCCTCCAACTGCTCCACGCCCACTTTACCCTTAACGCCCAATAGCAGCGCCTGGAATAGGAGCCTAGACAATGGCATCGCCTCAGTGGAGGAttcatcctcttcctctactcCTGTCCAATCAGAAGTAGAGTTGACCATGGTGTGAATTTAATTATATCCATTTTATCATAATGGTTCTTGGGCTTTAATTGGtggaaaaaatgtatttttgttgttttcatttttttatttgtttttaattgtaattttattttttattcgaTTAAATATCTTAAGATGTTGATTTGTTCAATTCTTCTATCCAGGGTTTTAGAGGTAGAGACAAAGTAACCAAGATCAAATATATTTTCTGTTAATTCCTCAGATTTCTTTGCATATGTATGTTTTTCTCATCAATGTCTGCCAGAGATTTAGTCTCTTAACCACTATCTGTCCCAAAACTGTAACTATCTGTCCCAAaactacaactgtagctcctCTTAACCACTATCTGTCCCAAAACTAAAACTGTAACTATCTGTCCCAAAACTAAAACTGTAACTATCTGTCCCAAAACTAAAACTGTAGCTCCTCTTAACCACTATCTGTCCCAAAACTAAAACTGTAGCCCCTCTTAACCACTATCTGTCCTAAAACTGTAGCTCCTCTTAACCACTATCTGTCCCTAAACTAAAACTGTAGCTCCTCTTAACCACTATCTGTCCCAAAGCTACAACTGTAGCTCCTCTTAAACACTATCTGTCCCAAAACTAAAACTGTAACTATCTGTCCCAAAACTAAAACTGTAACTATCTGTCCCAAAACTAAAACTGTAACTATCTGTCCCAAAACTAAAACTGTAGCTCCTCTTAACCACTATCTGTCCCAAAACTAAAACTGTAGCTCCTCTTAACCACTATCTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU873240 lncRNA downstream 11817 6671610 ~ 6672837 (-) True G766874
TU873234 lncRNA downstream 15834 6668565 ~ 6668820 (-) True G766870
TU873220 lncRNA downstream 53520 6630439 ~ 6631134 (-) True G766858
TU873019 lncRNA downstream 151547 6530040 ~ 6533107 (-) True G766701
TU873141 lncRNA downstream 155975 6527877 ~ 6528679 (-) True G766783
TU873306 lncRNA upstream 19872 6854776 ~ 6855625 (-) True G766915
TU873335 lncRNA upstream 96700 6931604 ~ 6932670 (-) True G766944
TU873360 lncRNA upstream 141759 6976663 ~ 6978236 (-) False G766959
TU873350 lncRNA upstream 142463 6977367 ~ 6978236 (-) True G766959
TU873376 lncRNA upstream 147085 6981989 ~ 6982190 (-) True G766961
XM_036987193.1 mRNA downstream 148903 6533163 ~ 6535751 (-) True badb
XM_036987191.1 mRNA downstream 159319 6500762 ~ 6525335 (-) False LOC110532903
XM_036987194.1 mRNA downstream 193697 6481631 ~ 6490957 (-) True gpha2
NM_001165251.2 mRNA downstream 275086 6407522 ~ 6409568 (-) True arl2
XR_005053472.1 mRNA downstream 321602 6362989 ~ 6363052 (-) True LOC118966206
XM_036987201.1 mRNA upstream 16293 6851197 ~ 6863016 (-) False LOC110531366
XM_036987203.1 mRNA upstream 16293 6851197 ~ 6882912 (-) False LOC110531366
XM_036987200.1 mRNA upstream 36368 6871272 ~ 6882253 (-) False LOC110531366
XM_021614553.2 mRNA upstream 51091 6885995 ~ 6907134 (-) False LOC110531364
XM_036987199.1 mRNA upstream 51091 6885995 ~ 6907134 (-) True LOC110531364
TU873212 other downstream 71242 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 220023 6457203 ~ 6464631 (-) True G766749
TU872974 other downstream 319126 6340621 ~ 6365528 (-) False G766665
TU872970 other downstream 319556 6358150 ~ 6365098 (-) False G766665
TU872969 other downstream 321840 6340621 ~ 6362814 (-) False G766665
TU873185 other upstream 37932 6872836 ~ 6882118 (-) True LOC110531366
TU873176 other upstream 130550 6965454 ~ 6969691 (-) True LOC110531380
TU873506 other upstream 410740 7245644 ~ 7251075 (-) True G767056
TU874434 other upstream 1277684 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 1354539 8189443 ~ 8191898 (-) True G768390

Expression Profile