RNA id: XM_036987205.1


Basic Information

Item Value
RNA id XM_036987205.1
length 2591
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110531380
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6963142 ~ 6969857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGCCTTGCACAGTAAACTCCCATCCAGCTGGCGGCCCTGTTGTGTTTCTGGGTTCGTCACCAACTAGAACGTCCCAAGATTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGAGTTATTTTTTCTGTTCCTTGTGTTGAGTAAAGAaagacatactgactcaactcaaCAGGCTACCCATCTCTAATTTGACAGAAAATGTCTAAACTACagatgttgtgtgtgtttttaaatgaTCGTTTATCGGCGGCTGCTGTGGATATTTTTGGTGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAGGACACCAGAGATACAACTATGTCGAATAGAACCCgtgcagctctctgtctctgaagaGGAGGTCACCTCTGAGCAACAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGACCAAacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCATATTTACTCCTCCTTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACGTCAAGATCCCATACTTGCTGAACACCCAACTCTCAGTCCACCTAAAATGTCTAAATTACAGTTGTTTCAAGAGTTTTTAAATGAGCGTTTAACGGCGTTTGCTGCTGTGGAGATTTCCGGGGAATTTGCGAAAGCAGTAGCAGAGTACCAGGAAGAGAATGATCGGCTACGGAGACTGCTGCGGATCACACCGGAGattaaactatgtagaatagACTCcctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAACAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGCCCACACAGATTAAAGAGGAACTCGGGACCAatcaggaggaagagcagcttcaaGGGCTCTTTGATACCAAAGACTCCATATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtcatTCTAAACCAGTGGATCCCAAGCCTTTGTCCAAGCACATGaggattcacacaggagagaaaccatttatctgtggtgactgtgggaagagctttATTCGCAAGGCGCACCTAACCAGGCATAaactgactcacacaggagagaaaccattctcctgtggtgactgtgggaagagcttcCGTCTCAAAGGGAACCTAACCACTCATAAACTGACTCACACCAGAGAGAAATcatttagctgtggtgactgtgggaagagcttcCGTCTCAAAGGGAACCTAACCACTCATAaactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcGTAAGGTGAGCCTAACTGAACATAAattgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcatTCGGAAGGTGCATCTAACTGAACATCAACTgactcacacaggggagaaaccattcACCTGTGATGACTGTGGGAAAAGATTTATTCAGAAGAGGGACCTGAGGAGACATATActgattcacacaggagagaaaccattcaCCTGTGGTGACTGCGGGAAAAGCTTCAATCGAAAGGGGCATCTAACCATGCATAaactgactcacacaggagagaaaccattcacctgtggtgactgtgggaaaagcttcaatcGAAAGGGGCACCTAACCATGCATAaactgactcacacaggagagaaaccattcacctgtggtgactgtgggaagagctttATTCAGAGGAGGGACCTAAGGAGGCATATActgattcacacaggagagaagctaTTTAGCTGTGTTGACTGAGGAAAAAACTTCAATCAGAAACAACATGGCTGCTTAGTCTGATAATATATTAATTCAGAAGACTAATCTGCTAACACGTGAAAAACATCCACAAAGACTGTAAATgaggacacagagaggagactaaGAGTATTGAGATACACCCAAGATCCCCTGTGGACCAACTCTAACTGGTCCTCCTGATCCTGCTCAGTCCAATGTCACAGTAATTATATAATGGGACTGTTGTCTGAACCTAACAGGCAATGTTGCTGCTCTTTGTGTATGAAATGGACAATTTGCAGTTCAGACAACCACCAGTTTTTAGGTGAACAACTGAGGGATGATGTTGGAGAGTTGTGAACACTCAATGTCGTAGTCCGACATGGATATAAGATGTCCAGATCAGATGCAGGTTGCCCAATAGGCGGCCCGTGGGGGATTTATTtggcccccaagttttctgagcaaaacaaGATAATATATAGAATTTTATTTTTTTGGTTCGTTGGATATTTATTTTATTAAGTGCCAGTagaaggcactctttcctctggtctaaaaacatatcccaatgccccagggcagtgattggggacactgccctgtgtagggtgccgtctttcggatgggacgttaaacaggtgtcctgactctctgaggtcattaaagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU873335 lncRNA downstream 30473 6931604 ~ 6932670 (-) True G766944
TU873306 lncRNA downstream 107518 6854776 ~ 6855625 (-) True G766915
TU873293 lncRNA downstream 142746 6817979 ~ 6820397 (-) True G766903
TU873294 lncRNA downstream 143254 6818396 ~ 6819889 (-) True G766904
TU873286 lncRNA downstream 160193 6794779 ~ 6802950 (-) True G766899
TU873360 lncRNA upstream 6807 6976663 ~ 6978236 (-) False G766959
TU873350 lncRNA upstream 7511 6977367 ~ 6978236 (-) True G766959
TU873376 lncRNA upstream 12133 6981989 ~ 6982190 (-) True G766961
TU873379 lncRNA upstream 14284 6984140 ~ 6984399 (-) True G766964
TU873380 lncRNA upstream 14816 6984672 ~ 6985349 (-) True G766965
XM_036989239.1 mRNA downstream 5363 6954992 ~ 6957780 (-) True LOC118966154
XM_021614553.2 mRNA downstream 56009 6885995 ~ 6907134 (-) False LOC110531364
XM_036987199.1 mRNA downstream 56009 6885995 ~ 6907134 (-) True LOC110531364
XM_036987203.1 mRNA downstream 80231 6851197 ~ 6882912 (-) False LOC110531366
XM_036989240.1 mRNA upstream 1002 6970858 ~ 7054255 (-) False LOC110531367
XM_021614570.2 mRNA upstream 84979 7054835 ~ 7065193 (-) True LOC110531378
XM_021614564.2 mRNA upstream 98671 7068527 ~ 7071119 (-) True LOC110531373
XM_036989271.1 mRNA upstream 102101 7071957 ~ 7074751 (-) True LOC118966172
XM_036987213.1 mRNA upstream 391053 7360909 ~ 7379030 (-) False tmem179ba
TU873185 other downstream 81025 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 349731 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 498512 6457203 ~ 6464631 (-) True G766749
TU872974 other downstream 597615 6340621 ~ 6365528 (-) False G766665
TU873506 other upstream 275788 7245644 ~ 7251075 (-) True G767056
TU874434 other upstream 1142732 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 1219587 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 1251675 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 1308961 8278817 ~ 8283324 (-) True LOC110531377

Expression Profile