RNA id: XM_036987213.1


Basic Information

Item Value
RNA id XM_036987213.1
length 1835
RNA type mRNA
GC content 0.48
exon number 5
gene id tmem179ba
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7360909 ~ 7379032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCAGTCAGTGTTGAATATTTAGCGAGTTCAGACCCCTCCAGCGACTTTTGTTGGTAAAAGAGGTTAGCAGCTACTGTTCAGGTTGCCATTGGGGAGTTTTGCCAACGGTTTGAGAGTTTCTATGGTTTTGATAGCATTTAGAGAGTTTTCCCACAGAAAATTCTGGAGAAGCTGTCTGTGCAACGGAAGTTACCGCAACAGCGCACAGGCAGAAAAGCACAAGGGGAGGGGACGGAAAACGCTCCGTCGGGGACTGCAGCGGTGCCACAGCAAGGCAGGTTGGTGCTGTGACGTCGTCGCGTCAACTGAAAAACGTAAAAACACCGCTGTCTGTCACGCGCTCCggtagacggagagagagggctTGAACAGGGGGACCATGATGGTGATACCGTGGCTGCTTCTCCTTGAGATGGGCTTATACGCCAGTTCTTTCGTGTGTGGGATAGTCACGGCATCTTCTCTCACTATCGTACAGGGTAGCTTCGGGGGGCTCTGTATGCTCTATGGAACAGTGAACCATAACTCCTCATCAGGCTCCATATTGGTCCAGAcctccagctctccttctctctgttacTTTGTCTCTGCTATctcagtgtgtgtagcagtgttctGTTTCTCTATATCACTGTACTGGATATATACATGCTGCCTGGATGGAGGGGTTAACAGagaGCGTCTATGGCTCAACGTGACCCTGGTGGTGTGTGGCGtgtttctcttcttcctcctggTGACGGGCTGTGTGTTGAAGGTCGGAAGAGACTCTCTGTGTGACTCTGTCCTACACGCTGTCCCCAACGTCACCAGATGTGAACAGGCTCAGTCTAGGACCTGGATCAGTCCTTACACGGGAACGCAGTTCTACACTGGACTGTACAACGCAGGGaCAGCAGTGTGGGTGAACTTATTTTTCTGGATTCTGATTGGCATACTGGTGGTGATCCAGAGAGGTCAAGGGTCAGATTCCAGAATGATGACGCCCTCTGAGACCGAACGTCTTTTCCCAGGCCAGGCCCAGCAGCAGTGACTCATAACCGTCTCGCCGTACGACCTGTTGGCGAggcgctcaaacacacacacacatatctaacACTCCTCACTGTTTGACCTGTAAGAGAATGAatgaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggctgtgtaggtctctcacacagtcactcTTCTACAGCTGTTCCtgggctcggtgtgtgtgtggacctctGGGTACTGCAGCCTAGTGAAGCAGAGATGGTCTACACTGGAATAAATAATATTAGATATGGTGTGACATGTAATGTCACTGTTCACCTGGTTTTGAAACAGTGTAACTGAGAACAATTCATGTACCTTTTTGTGAAGCTCTTATACATTTCTCTGTGGTCCCTCCATCCGCAGTCCTTTAGTTcttgtattttgggagagaggtgtgtgtgtgtgtgagtgagtgagactggCTTACAGGGACATCAATTGTCTCAGATAAtatctctccgtgtgtgtgtgtgtccactcaaGACCACAGACAAACCAAGTCACAGTCGGCATTGTCACACTGTCCTACGCAAACACACACTAAGATTCCTTCCTGGTTATTAAGAAGCCATTTTGTTACATCATTCTCTTTCTGCCTGcaattatttgtactttttttaATGAATATTGAAAAGCAAATATGTGTTTTGATTTGAGTGAGGTATTGATGTTTTTTTACAGAACTTTCTAAAACAGTTATCGACCAATaacagtaggtgtgagcagagcatcTTGACCAATAAAGACGCATTGGTTTGTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874092 lncRNA downstream 17762 7342931 ~ 7343147 (-) True G767468
TU874087 lncRNA downstream 21779 7338755 ~ 7339130 (-) True G767463
TU874079 lncRNA downstream 23120 7336750 ~ 7337789 (-) True G767460
TU874085 lncRNA downstream 27982 7328900 ~ 7332927 (-) True G767461
TU874063 lncRNA downstream 64850 7295671 ~ 7296059 (-) True G767445
TU874025 lncRNA upstream 2525 7381555 ~ 7383075 (-) False G767420
TU874027 lncRNA upstream 2525 7381555 ~ 7383075 (-) False G767420
TU874028 lncRNA upstream 2525 7381555 ~ 7383075 (-) False G767420
TU874029 lncRNA upstream 2525 7381555 ~ 7383075 (-) False G767420
TU874030 lncRNA upstream 2525 7381555 ~ 7383075 (-) False G767420
XM_036989271.1 mRNA downstream 286158 7071957 ~ 7074751 (-) True LOC118966172
XM_021614564.2 mRNA downstream 289790 7068527 ~ 7071119 (-) True LOC110531373
XM_021614570.2 mRNA downstream 295716 7054835 ~ 7065193 (-) True LOC110531378
XM_036989240.1 mRNA downstream 306654 6970858 ~ 7054255 (-) False LOC110531367
XM_036987204.1 mRNA downstream 391052 6963142 ~ 6969857 (-) False LOC110531380
XM_036987216.1 mRNA upstream 4319 7383349 ~ 7390542 (-) False prox3
XM_036987217.1 mRNA upstream 4319 7383349 ~ 7390543 (-) False prox3
XM_036987218.1 mRNA upstream 28263 7407293 ~ 7426803 (-) True snx15
XM_036987223.1 mRNA upstream 426471 7805501 ~ 7873725 (-) False LOC110515519
LOC118965986 mRNA upstream 681554 8060584 ~ 8061856 (-) True LOC118965986
TU873506 other downstream 109834 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 391218 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 478791 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 747497 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 896278 6457203 ~ 6464631 (-) True G766749
TU874434 other upstream 733558 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 810413 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 842501 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 899787 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 1603438 8982468 ~ 8990706 (-) False G768780

Expression Profile