RNA id: XM_036987217.1


Basic Information

Item Value
RNA id XM_036987217.1
length 2831
RNA type mRNA
GC content 0.55
exon number 5
gene id prox3
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7383349 ~ 7390543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGATAGGACAGCGCGCGAGGATGGCACAGAGAGATATGTTCggaagcgagagagggagagagagagattgagagagagagggagagagagagagagagagaggggtataggcAACGAAGAGCAGCAATAACAGGAAACACCGCGCGCAGGGCTTTCCTACCGAGTCGATGCTCGCGCTGACCAGAGCAGACCGATAAAACGGGAAGAGGAACGTCTCACAACTCTAAACAGAACCAACCGGTTCTAACAGTCTCtcggggagagagaaaaagggagagaacaGTCTGTTTCCGTGCAGGGAGTTATCCAGTCGAGTGAGTTGTCAAAAaaagTCATTGAGGAGGAGAAAATAAAGAGCTATGGATTCCCCCTCGGATTTGTTTGGCCATCAGTCCTCCTTGATCTCTCCTTTCGACCCCTATCCCAACCCCTCCGACCACCCCACACCCTCAGGAGGGGGGCACGGTGCACCCAACCCCTCCTCACGACCCCCCTACCCCCTCATCCACCACCTGCTGCAGCCTGGTGGAGTCCCCATGAGGGTCGGGGGGCAATTACACCCACAAAGATATAACAggcaagaggaggaagaggaggaagaggaggaggaggagatgggtggAGGATTGGTGGGGGTAGAGGGGAAGCGGCTCAGTGGCTCCGCCCTAGTGGCGGACTGGAGTTATGACATGCTGAGAGTGAAGAGATTAAGACTGGAGAGTCTAGttaaaggagatggagagataggcttagaggaggaggaggagagagggaggaggagtgcggagagggggaacagggagagagggagggaggagaggagaaaggagagagaggagctgaaggAACAGTTGGAAGAGGCGAGAGGAAGACTGAAGACCTTGCAGGAGAAAGTCTGGAAAGCATTCGGAGAGAGACCCgctcaggaggagaggaggaagaggggcggAAGAGAGGATGatggtgatggagggatggacgaagaggaggaggaggcggagacAGCAGAAGGGAtcactgaagaagaagaagggggagaaaTCGACGATCTTCCTCTTTCCttcatccctccttctccccctttctACAGCGTCGCTAAACGAGACCGAAAAGCGAGGGATCACGAGAAACCAACGGGGGAAGATAAGAGGAACGTGAACGGAGGAGGGGGGGTGTTTTTGGAGGGGGTTCTGGAGAGGGCGGCAGTGTGGATGGGGTGTGGGGTGGTGAGGGGGGAGTGGGAGGGTTTTGGGGGAGGCGGAGGGAGTCAGAAGTTTGCCCAAGCTTTAAAACAGGAACTAGGGAGCGCTGTAGCTCGAGTCATCGATAGGGTCCTCCGTCTATACACTCAAAAccaacctctccctccctctgtccatccctccatcttgtcgtccggagagagaggggacgagggAGGAGACAGTGGAGGAGTGTGGGCAAcccttagagagagggaggagaggagggggcgaGTTGGTGCGACACATGACCAGCAACCCCCCCGCCCAAacggagacccccccccccacgcctTCCGAGAACAATCGGAAGCGCTGCCGTTGGTTACGCGTCGTCCCGACAACCGCCGAACCACACTTCTGCCCTCCAACAACCGTACTCACaaccctctccttccttctcaccccctcccccctctccgtcAACCTCACCCCCACCCCGCCttcctcccccctgtctctcgtCATAAggactcctcccccttcctccccccctcctcctgcccgctccccctccccctcctccactacaccatgcAACAGCTCttcactcgttctctctctcaccttcctcctctccacaaGGGGAACGTTATGAACTCTGATGCCTACATGGAGGGGAACCCTTTCCCCCCCCAGCACAccccatcctcctctcatccctccttccctcctctctccctcgctctgatGGGCGGGTTGGATCGGCTGGATGGAGGGATGCAGCATCttcatgacagagagagagagagggatggagggatgagaggaggaggaggggatggagggatgagaggaggaggaggaggggatggaggaatggattcGGGGATGTATCTCGGACCGGGTTCATCTCAGGAGGGTTTGTCTCCATGTCATCTGAAGAAAGCCAAACTGATGTTCTTCTATGCTAGATACCCCAGCTCTAACACGCTCAAGACTTACTTCCCTGATGTCaagttCAATCGCTGTGTGACCTCCCAGCTGATCAAGTGGTTCAGTAACTTCCGAGAGTTCTTCTACATCCAGATGGAACGCTTCGCCAGACAGGCTGCCCGCGACGGTGCACCCTGCCtggggagagagggcagagagcccCCCCTACGCCTGGGGAGAGACACGGAGCTCTATCGCATACTGAACATGCACTATAACAAGAGCAATGACTATCAGgttcCTGACAGGTTTGTAGAGATAGCTGAGTTAGCCCTGAGGGAGTTCTTCACAGCCATACAGACAGGACGTGACAGTGACCCCTGCTGGAAGAAATCAATTTATAAGATGATCTGTAAACTAGATAGTCCTGTGCCTGATAGTTTTAGACTGCCTGGCTGCCCTATTGGCTGAggagaggtcacacacacacaccctgggaaCACACACCATGACCTGATGAACAACAATGAAATGTGACCTGAACATGTGACCTATAATGGAGGGAGGAGCAAGGAAGGTCTAATGGAATTACTATGATAggatattactgtactatactattatacgatattaatatactgtactatactattaTACGatattactatactgtactatgctaTTATACGatattactatactgtactatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874029 lncRNA downstream 274 7381555 ~ 7383075 (-) False G767420
TU874100 lncRNA upstream 19284 7409827 ~ 7411001 (-) True G767476
TU874102 lncRNA upstream 25490 7416033 ~ 7416429 (-) True G767477
TU874110 lncRNA upstream 39659 7430202 ~ 7434586 (-) True G767483
TU874148 lncRNA upstream 124692 7515235 ~ 7517790 (-) False G767516
TU874149 lncRNA upstream 124692 7515235 ~ 7517790 (-) False G767516
XM_036987215.1 mRNA downstream 4317 7360909 ~ 7379032 (-) False tmem179ba
XR_005053158.1 mRNA downstream 4317 7360909 ~ 7379032 (-) True tmem179ba
XM_036987213.1 mRNA downstream 4319 7360909 ~ 7379030 (-) False tmem179ba
XR_005053157.1 mRNA downstream 4319 7360909 ~ 7379030 (-) False tmem179ba
XM_036989271.1 mRNA downstream 308598 7071957 ~ 7074751 (-) True LOC118966172
XM_036987218.1 mRNA upstream 16750 7407293 ~ 7426803 (-) True snx15
XM_036987223.1 mRNA upstream 414958 7805501 ~ 7873725 (-) False LOC110515519
LOC118965986 mRNA upstream 670041 8060584 ~ 8061856 (-) True LOC118965986
XM_036987244.1 mRNA upstream 671683 8062226 ~ 8064024 (-) True LOC118965984
LOC118965983 mRNA upstream 675757 8066300 ~ 8067723 (-) True LOC118965983
TU873506 other downstream 132274 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 413658 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 501231 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 769937 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 918718 6457203 ~ 6464631 (-) True G766749
TU874434 other upstream 722045 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 798900 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 830988 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 888274 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 1591925 8982468 ~ 8990706 (-) False G768780

Expression Profile