RNA id: XM_036987245.1


Basic Information

Item Value
RNA id XM_036987245.1
length 1398
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC118965985
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8067827 ~ 8069224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagagagaaagagaaggagagagagaaagaggaggagagagagaaggggagagagaaagaggagagagagagaaagagaaggggagagagaaagagaaggggagagagaaagagaaggggagagagaaagagaaggagagagagaaagagaaggagagagagaaagagaaggagagaaagagaaggagagagagaaagagaaggagagagagaaagagaaggagagagagaaagagaaggggagagagaaagagaaggagagagagaaagagaaggggagagagaaagagaaggggagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaggggagagagaaagaggagagagagaaaaagagaaggggagagagaaagagaaggagagagagagaaagagaagtggagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaagagaaggagagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaggggagagagaaagaggagagagagagaaagagaaggggagagagaaagagaaggagagagagaaagagaaggggagagagaaagagaaggagagagagaaagagaaggggagagagaaagagaaggagagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaggggagagagaaagaggagagagagagaaagagaaggggagagagaaagagaaggagagagagagaaagagaaggggagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaagagaaggggagagagaaagagaaggggagagagaaagagaaggggagagagaaagagaaggagagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaggggagagagaaagaggagagagagagaaagagaaggggagagagaaagagaaggggagagagaaagagaaggggagagagagaaagagaaggggagagagaaagagaaggagagagagaaagaggaggagagagagaaagaggaggagagagagaaggggagagagagaaagagaaggagagagagagaaagagaaggggagagagaaagagaaggagagagagagaaagagaaggagagagagagagagagaaggggagagagagaaagagaaggagagagagagaaagagaaggggagagagaaagagaaggagagagagaaagagaaggggagagagaaagagaaggggagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874461 lncRNA downstream 12322 8055263 ~ 8055505 (-) True G767766
TU874460 lncRNA downstream 22166 8045443 ~ 8045661 (-) True G767765
TU874458 lncRNA downstream 24884 8042718 ~ 8042943 (-) True G767763
TU874456 lncRNA downstream 25406 8040835 ~ 8042421 (-) False G767762
TU874433 lncRNA upstream 43364 8112588 ~ 8114070 (-) False LOC110510419
TU874445 lncRNA upstream 45922 8115146 ~ 8115492 (-) True G767753
TU874486 lncRNA upstream 62188 8131412 ~ 8132354 (-) True G767783
TU874496 lncRNA upstream 79989 8149213 ~ 8151058 (-) True G767792
TU874504 lncRNA upstream 94052 8163276 ~ 8163877 (-) True G767800
LOC118965983 mRNA downstream 104 8066300 ~ 8067723 (-) True LOC118965983
XM_036987244.1 mRNA downstream 3803 8062226 ~ 8064024 (-) True LOC118965984
LOC118965986 mRNA downstream 5971 8060584 ~ 8061856 (-) True LOC118965986
XM_036987223.1 mRNA downstream 194102 7805501 ~ 7873725 (-) False LOC110515519
XM_036987218.1 mRNA downstream 641024 7407293 ~ 7426803 (-) True snx15
XM_036987243.1 mRNA upstream 14388 8083612 ~ 8110566 (-) True brms1
XM_036987247.1 mRNA upstream 44412 8113636 ~ 8155916 (-) False LOC110510419
XM_036987246.1 mRNA upstream 152307 8221531 ~ 8253809 (-) False LOC118936684
XM_036987232.1 mRNA upstream 185571 8254795 ~ 8265001 (-) False krcp
XM_036987231.1 mRNA upstream 185571 8254795 ~ 8265108 (-) False krcp
TU873506 other downstream 816752 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 1098136 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 1185709 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 1454415 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 1603196 6457203 ~ 6464631 (-) True G766749
TU874434 other upstream 43364 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 120219 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 152307 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 209593 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 913244 8982468 ~ 8990706 (-) False G768780

Expression Profile