RNA id: XM_021614568.2


Basic Information

Item Value
RNA id XM_021614568.2
length 1583
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110531377
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8277882 ~ 8283359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCTTGACTAAAACACGGAAGTAGAATTGGAGTAAAGAAATACCCACTGACAGATCTGAATAGGCTACCCAACTCTCATTCGACTGAAAATGTATAAACTACAGTTGTTGAGTGTGTTTTTAAATGATCGTTTAACTGCGGCTGCTGTGGAGATTTTTGGGGAAGTAGAGAAAATGGTAGTGGAGTACCAGGAGGAGAATAATCGTCTACGGAGCCTGCTGCGGATCACACCGGACATAAAACTATGTAGAATAGACTCCCTGcagctctctctcgctgactctgaAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAGCCCAcacagattaaagaggaacaggaggaagtcaggaccagtcaggaggaagagcagcttcaaGGGGTGGAGCCTGATATCATAGAGTTCAATTTCACTCCTTCCTGTGTGAAAAGTGAATGCGATCAGGAAGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgactCTAAACCAGTAGATCCTGAACCTTTTGGCACTGTGACCCACCTTAAGGGTTTCAACATTCCGTGTGGCCCTCCAGATAATCAGAACAATGCCTACAGCCACAGTACAGCCATAAGCAGTGACCCAGTAGAACTTGACAGTAGCCCACAATTGGATCCCAACCCACAATTGGATCTGATCCCACCAATGGGGGAACTCTGCACCTGCCCCTTTTGTGGTAAGACCTTCAAACAAAAAGGAAATCTGTCCATGCACATGaggattcacacaggagagaaaccttttagctgtggtgactgtgggaagagctttATTCAGAAGGGGGACCTAAGGAGACACAtactgactcacacaggagagaaaccattcaGCTGTAATTTTTGCTGTAAAAGCTTCAATCAGAAAGGGGACCTAAGGAGACATATcctgactcacacaggagagaaaccatttagctgtgaTTACTGTGGTAAAGGATTCATTCGCAAGGAGCACCTAACTGCACATATACGGACTCACACGGGGGAAGTTTCGGTCTCAGGCAGAACCTAACCACGCAGAAACTGATATAGATCTATGATCGATTTTAATGTTGAAAACATTctgtaaataaagtttgatttgaatgaTTGAGGTAACGATCAAACAGCACAGAGGATTGTAGGAAATTCACAGGTCTGCTGTTCAAAGTCTGTAGTTCTCTTCATTAGAAACAGGAATATCTGATGGTTTGATTAGGAATGTCTGTCATGGTGATAAAGgaaggttgttgttgttgatgccaCGAAATACAATTCCAGAAAATATCTCCTTCCATTTTCTCAAGAGTTTCTCATCAATTCAGTTGCTGCTCGTGCTGCTCATTCACGATCTGAAATTGCGATTCGATATTGCGATGTTATTGCTGCTATTTAATATTTTCGTAAACATATCGCTCCCTATATGTCTcctgcagagagacgagagagcatcagaaaatgtgttttgatcatggaaataaaagtgatgaaaacatgttggctcaccattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU875301 lncRNA downstream 1397 8276173 ~ 8276485 (-) True G768425
TU875290 lncRNA downstream 30472 8240270 ~ 8247410 (-) True G768414
TU875277 lncRNA downstream 52829 8223935 ~ 8225053 (-) True G768407
TU875274 lncRNA downstream 54311 8222864 ~ 8223571 (-) False G768406
TU875276 lncRNA downstream 54311 8222864 ~ 8223571 (-) True G768406
TU875323 lncRNA upstream 35962 8319321 ~ 8321009 (-) True LOC118965987
TU875372 lncRNA upstream 74896 8358255 ~ 8365890 (-) True G768483
TU875401 lncRNA upstream 124774 8408133 ~ 8408436 (-) True G768504
TU875429 lncRNA upstream 176476 8459835 ~ 8501302 (-) True G768528
TU875461 lncRNA upstream 205804 8489163 ~ 8489756 (-) True G768554
XM_036987230.1 mRNA downstream 11284 8254795 ~ 8266598 (-) True krcp
XM_036987229.1 mRNA downstream 11285 8254795 ~ 8266597 (-) False krcp
XM_036987231.1 mRNA downstream 12774 8254795 ~ 8265108 (-) False krcp
XM_036987232.1 mRNA downstream 12881 8254795 ~ 8265001 (-) False krcp
XM_036987246.1 mRNA downstream 24073 8221531 ~ 8253809 (-) False LOC118936684
XM_036987236.1 mRNA upstream 719 8284078 ~ 8286568 (-) False LOC110531375
XM_021614566.2 mRNA upstream 723 8284082 ~ 8288596 (-) True LOC110531375
XM_021614565.2 mRNA upstream 7882 8291241 ~ 8295354 (-) True LOC110531374
XM_021614560.2 mRNA upstream 18342 8301701 ~ 8309914 (-) True LOC110531370
XR_005053161.1 mRNA upstream 35640 8318999 ~ 8320554 (-) False LOC118965987
TU875271 other downstream 25127 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 85984 8189443 ~ 8191898 (-) True G768390
TU874434 other downstream 163812 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 1026807 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 1308191 6965454 ~ 6969691 (-) True LOC110531380
TU875757 other upstream 699109 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 699109 8982468 ~ 8990706 (-) True G768780
TU877415 other upstream 2091350 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 2091350 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 2689014 10972373 ~ 10974413 (-) True G770549

Expression Profile