RNA id: XM_021614573.2


Basic Information

Item Value
RNA id XM_021614573.2
length 1535
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110531383
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8324225 ~ 8330124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCAAAATTCCTTGACTAGAACACGGAAGTAGGATTGGAAACGACTGTTTTGATTTTGCATTCCTTGTGTGGGGTAAAGAAATACATACTGACTAAACTGAATAGACTACCCAACTCACATTCGACTGAAAATGTCTAAACTACAATTGTTGAGTGTGTTTTTAAATGAGCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGGGGATCACACCGGAGATACGACAACGTAAAATAGaaTCCCTGCAGCTCTGTGTCTCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAATGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAGCCCACACAGATTAAAGAGAAGCAAGAGGAACTCAGGACCAGTCAGGAGGAGCTTCGAGGTCTGGAGCCTGATATCATAGAATTCAAATTCACTCCTTCCTGTGTGAAAAGGGAATGTGATCCGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAATCCAGActgtggagaacagagagagcgacTGTAAACGAGTGGATTTCACACGTTTTGGCACTGTGACCCGCATTAAGGGTCTCAACATTCCCTGTGACCCTCCAGATAATCAGAACAATGCCTTCAGCCACAGTTCAGCTGTAAGCAGCTACACAGGAGGACTTGACAGCAGCCCACCATTTGAGCCTAGCCCATCATTGGATCCAAACCCACCAATGGGGGAACACTATTCCAAACTCAGCACCACGTCTATAAAAACTCACCACTGCCGTGACTGTGGTGAAACGTTTCCTCTGAAAGCTGACCTGCAGAGGCATGTGACTTTTGCCAAGAAGAGAGTCAGCGAATGCCACTTATGCAAAAAACTCTATAACTCCACCTGTAAACTGAAGGCCCATGTCCAACTATGTCATGGTGGTAAACCCTGCACCTGCCCCTTTTGTGGCAAGGCCTTCAAACAAAAAGGACATCTGTCCAGGCACATGAatattcacacaggagagaaaccatttacctgtggtgactgtgggaagagctttATTCAGAAGGGGGACCTAAGGAGGCATAtactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaagGCTTCATTCGCAAAGAGCACCTAACTGCACATGTACGGACTCACACTGGAGAGTAATCATATGGCTGCTCAGTCAGAGGTAAAAGATTAATTCAGATGGTAAACCTGCTGACGCATGTGAGATACATCCACGAAGAAAGAAAATAGGATGAAAACACTAAAAAGAAAGACAGTTAGGACAAAGATCTCCTGTCAGGAGATGGGAATAAAAATGGAGGATGTGAACAACACTCTTAGGAAAGCAAAGCTACTCTGGATCATTCCTTCTGTGGGTTTCAGATAAATAGATACGTGATGGATTTACTTTAGTAAAATGTTTTgtgtaaataaagtttgatttgaattaaAAGTTTAGGAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU875323 lncRNA downstream 3216 8319321 ~ 8321009 (-) True LOC118965987
TU875301 lncRNA downstream 47740 8276173 ~ 8276485 (-) True G768425
TU875290 lncRNA downstream 76815 8240270 ~ 8247410 (-) True G768414
TU875277 lncRNA downstream 99172 8223935 ~ 8225053 (-) True G768407
TU875274 lncRNA downstream 100654 8222864 ~ 8223571 (-) False G768406
TU875372 lncRNA upstream 28131 8358255 ~ 8365890 (-) True G768483
TU875401 lncRNA upstream 78009 8408133 ~ 8408436 (-) True G768504
TU875429 lncRNA upstream 129711 8459835 ~ 8501302 (-) True G768528
TU875461 lncRNA upstream 159039 8489163 ~ 8489756 (-) True G768554
TU875485 lncRNA upstream 201550 8531674 ~ 8533005 (-) False LOC118966156
XR_005053161.1 mRNA downstream 3671 8318999 ~ 8320554 (-) False LOC118965987
XM_021614560.2 mRNA downstream 14311 8301701 ~ 8309914 (-) True LOC110531370
XM_021614565.2 mRNA downstream 28871 8291241 ~ 8295354 (-) True LOC110531374
XM_021614566.2 mRNA downstream 35629 8284082 ~ 8288596 (-) True LOC110531375
XM_036987236.1 mRNA downstream 37657 8284078 ~ 8286568 (-) False LOC110531375
XM_021614574.2 mRNA upstream 10655 8340779 ~ 8343063 (-) True LOC110531384
XR_005053159.1 mRNA upstream 26457 8356581 ~ 8385968 (-) False LOC110531390
XR_005053160.1 mRNA upstream 26524 8356648 ~ 8400509 (-) False LOC110531390
XM_036987242.1 mRNA upstream 37558 8367682 ~ 8400662 (-) False LOC110531390
XM_021614580.2 mRNA upstream 56354 8386478 ~ 8400668 (-) True LOC110531390
TU875321 other downstream 40901 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 71470 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 132327 8189443 ~ 8191898 (-) True G768390
TU874434 other downstream 210155 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 1073150 7245644 ~ 7251075 (-) True G767056
TU875757 other upstream 652344 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 652344 8982468 ~ 8990706 (-) True G768780
TU877415 other upstream 2044585 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 2044585 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 2642249 10972373 ~ 10974413 (-) True G770549

Expression Profile