RNA id: XM_036987242.1


Basic Information

Item Value
RNA id XM_036987242.1
length 1836
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110531390
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8356581 ~ 8400668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAACACGGAAGTAGAATTAGAAACGAGTTTGTTTTGGCAATCATTTAGTGGAGTAAAAATAAGACATACTGACTGAACTAAATAGGCCACCCAACTCTCATTCGACTGAAAATGTCTAAACTACAGTTGTTGCGTTTGTTTTTAAATGAGCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGTGCAGTTGAGAAAACGGTGGTGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGAATCGAATCACACCGGAGattaaactatgtagaatagactccctgcagctctctgtctctgaagaGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACTCAGAGCCCACACTGATTAAAGAGGAAGAGGCGGAACTCAAGACCagtcaggaggaagagcagcttcaaGGGGTGGAGCCTCGGGGAAGGCACTTTGTGGCTGGGAAGCTGGTCTGGGTCTACAGCCCCCTAAGGAAATAAGGCAGATGCCCCAAGTTGGACAGTCACTGGGTGGGACCCTGCAGTGTCCTGGAGAGGGTAGGGGAGGTTGTTTACTGGGTGCAGCTTCCTCCCAGGGGGAGAAAGGTGACACTGCACCAGGACAGGTTAGCCCCATGCAGAGGGGCCTCTTCTCCCCAAACCCCAGGAACCCCCACAATTCCCCTCTCTGGCAATAACATTCTCCAGGCACCCACCCCCAGGTGCCGCAGACAAGGCTCCAGAGAGCccactccccctgtctccccccctgTGTCACCGTGTGGTTCCCCAGAGCCACGGACTGTATTCCCCGTTCCCCCTTCCTTGTCCCCCATATCCCTGCCTTCAACCCCTGGGTCCCAGAGGGGCACTCTGCGACCATCACGGCCACGCAGGCAAAGGAGACCTCCGGGTCGCTTCAGAGACTTTGTTCCCTCGGGGATGAGGGACTTTGTGGTGGGGGGGCTgtgtagcgacccgcacagacagctgtgtgttatgtgttaggctagtaggtggttgtgttgtacttaccagtacccagtATTCGCAGGGTCCGACAggccaatcaacctgctatctgccaatcacaggaatgtctggaatgttctgatgccgggtATCCTGGcggttggcggagtggcgtggaggggggttgggcagggggatggagcattggaagttaagaccaggtttagTCTTTGTTCTCTCTTACGTCTGGGCTTCACAGGAGAAGGTCACGATTGGCTTGTGGgttatctttcatttatttggcgtgggctacggccaaacagtagcctgtgtaaagttggtttaataaaccgtcaattcgtaaactcaatcctccgtctggacaattgttcctttatgatctagtcaggtcattacaatacattatattaAATACAATTCCAGAAAAAGACTCCTTGCATTTGTTCAAGAGTATTTCTCATCAATTCTGACCTGATGCTGCTCATtcgaccgactctcttctctgtatatatcaatgatgtcgcttttgctgctggtgagtctctgatccacctctacgcagacgacaccattctgtatacttctggcccttctttggacactgtgttaacaaccctccagacgagcttcaatgccatacaactctccttccgtggcctccagcaGCTCTCAAATAAAACTAAAACTAAAACACCCATGCTgacaaacatacccttgtaaaactgaccatcttgcCGATCCTCGAATTTGGCAATGACATTTAcagaatagcctccaacaccctactcaacaaattggatgcagtctatcacagtgccatccgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU875372 lncRNA downstream 1792 8358255 ~ 8365890 (-) True G768483
TU875323 lncRNA downstream 46673 8319321 ~ 8321009 (-) True LOC118965987
TU875301 lncRNA downstream 91197 8276173 ~ 8276485 (-) True G768425
TU875290 lncRNA downstream 120272 8240270 ~ 8247410 (-) True G768414
TU875277 lncRNA downstream 142629 8223935 ~ 8225053 (-) True G768407
TU875401 lncRNA upstream 7471 8408133 ~ 8408436 (-) True G768504
TU875429 lncRNA upstream 59173 8459835 ~ 8501302 (-) True G768528
TU875461 lncRNA upstream 88501 8489163 ~ 8489756 (-) True G768554
TU875485 lncRNA upstream 131012 8531674 ~ 8533005 (-) False LOC118966156
TU875486 lncRNA upstream 131012 8531674 ~ 8532743 (-) True LOC118966156
XM_021614574.2 mRNA downstream 24619 8340779 ~ 8343063 (-) True LOC110531384
XM_021614573.2 mRNA downstream 37558 8324225 ~ 8330124 (-) True LOC110531383
XR_005053161.1 mRNA downstream 47128 8318999 ~ 8320554 (-) False LOC118965987
XM_021614560.2 mRNA downstream 57768 8301701 ~ 8309914 (-) True LOC110531370
XM_021614565.2 mRNA downstream 72328 8291241 ~ 8295354 (-) True LOC110531374
XM_036987237.1 mRNA upstream 17503 8418165 ~ 8422251 (-) True LOC118936450
XM_036987228.1 mRNA upstream 36516 8437178 ~ 8443098 (-) True LOC110531388
XM_036987241.1 mRNA upstream 49425 8450087 ~ 8455385 (-) False LOC110531389
XM_036987240.1 mRNA upstream 49425 8450087 ~ 8455386 (-) False LOC110531389
XM_021614579.2 mRNA upstream 49425 8450087 ~ 8457560 (-) False LOC110531389
TU875321 other downstream 84358 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 114927 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 175784 8189443 ~ 8191898 (-) True G768390
TU874434 other downstream 253612 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 1116607 7245644 ~ 7251075 (-) True G767056
TU875757 other upstream 581806 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 581806 8982468 ~ 8990706 (-) True G768780
TU877415 other upstream 1974047 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 1974047 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 2571711 10972373 ~ 10974413 (-) True G770549

Expression Profile