RNA id: XM_036987241.1


Basic Information

Item Value
RNA id XM_036987241.1
length 2516
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110531389
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8450087 ~ 8457581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCGTCACTGGTTCATCCCGTGATGATTGTGTTTTCATCCACCGGTAGcatgtgggtgctttatatgcgctaGTCAATTGAGTGAATGTCTACttattaaatacagaaatattaatATACgcatactgtatgatagctagcaaatgaaTTAGATAACTAGCTAGAACTTCTGAAGGAAAATGtgtatttctacaatttccaaaagataaCCAAACAAAACATTGACTTTTTTACGAGGTGtgtttgtgccgtcatgtgcattagtagcacaatttcaaACCAATttgcatttgtttttatttacacTTGTACGTTAACTTAAAAACAACGGAGAAGTTTTCGCTGACCgttcttagcggatgtacaatcgtCGCCAAATTGAATTATGGCGAGTTTCAGGCCCtggagtgaacataattgtacacacGCAAACTCGACTAAAAAAAGACAACTAAGGGGCTtacgttgcaaacttcccttgcttggctaatgaTTTGGACCACCCGCCAAGATGGCGatggggattcccccaagggcataaggccCTTGGGATGATGGACTCCCTGCAGATCTCTGTCTCTGAAGAGGAGGTTCCTCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCGGGGGCAGGAGGACCCAGAGACCACACAGATTAAAGAGAAACAGGAGGAAGTCAGGACCagtcaggaggaagagcagcttcaaGGTCTGGAGCCTGATATCATAGAGTTCGATTTCACTCCTTCAGGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACtgtgaaggacagagagggagactcTAAACCAGTAGATCGCAAACCTTTTGTCACCGTGAACCACCTAAAGTGTCTTGACATTCCCTGTGATCCTCCAGATAATCAGAACATTGCCTGCAGCCACAGCTCTGCTGTAAGCAGAAACCCAGTAGGACTTGACAGCAGCCCACCATTGGATCTGAACACAATAATGGGGGAAACCTGCACATGGCCCTTTTGTGGCAAGACCTTCAAACAAAAAGGACATCTGTCCAGGCACATGAgggttcacacaggagagaaaccttttagctgtggtgactgtggaaAAAGCTTCAGTCAGAAGGGGACCCTAACCATGCATAaactgactcacacaggagagaaaccgtttAGATGTTTTTTTTGCAGTAAAAGCTTCAGCCAGAAAGGGGACCTAATGAGACACATACTGACTCACACgggagagaaaccatttagctgtggtgactgCGGTAAAGGCTTCATTCGCAAGGAGCACCTAACTGCACATTTACAGACTCACACAGGAGAAGTGTCGGTCTCAAGCAGAACCTAACCATGCAGAAACTGATATAGATCTGAAACTGTCTAAACCGtttagctgtggtgactgtgggaaaagcttcgGTGTCAAGGGGAACCTAACTGTTGACATAGAGACACAGGATGATACACTTCTATttgtggtgactgtgggaaagGCTTCAATCATAAGATGGACCTAAGGAGGCATAAACTGACTTACAGtgaatttggaaagtattcagaccccttgactttttccacattttcttacattacaaccttattctagatttgattaaataaaaaaatgccctcagcaatctacacacaataactcatATTGACAGTGAAAACAGTTTATCAATTTTTTtcacatattttttaaatatttttaaataacttatttacataaagtattcagaccctttgctatatgATTATAAAATTGAGTTTgggtgcatcctttttccaatgatcatccttgatgtttctgcaacttgattggagtccacctttggaAAATTCCGTTGACAAGACATGTTCTGTCAGCTGATGAGGAATATGCAAGGATGTGGACACCTCGTAGGAAAGGAGGATCATTCACACTGAGGGTTTCAGATAAAGGTATATATAAAAGCACGTTGTGTTTTTCAACATTTTATgtgaataaagtttgatttgattcaattGATGATGTAATGATTAAACAGTGAATGGTAGGAATGTAGGAAGCTCACAGGTCTGCTGTTCTGTCTGATGTTTTCACGTTATTAAAAACAGGAATTCCTGGGCCTTTCGATTTAGAATGTCTCCCAGCTGATGAGAGAGTGGTTATTGATACATGGAAAAAATATTTACTTTCCAGAATATATCTTCCTTCCATCGGTCCAAAAGTATTTCTCATCCATTTTGACCTAATGCTGCTTATTCATGATATTGTTTTGAATCTTTTGGGAAGTAATGATTTATAATCGACACCTCGTAAGTACACTTTGTAGAAGTGCAAACTCGGTTTTAAGTATACTACAGTGTTTTTCAGTCCCAACTCAATAAAATTATTTGTAAAATCTCCTTATTACTGCATTCTTTAGTTtagcgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU875401 lncRNA downstream 41651 8408133 ~ 8408436 (-) True G768504
TU875372 lncRNA downstream 84197 8358255 ~ 8365890 (-) True G768483
TU875323 lncRNA downstream 129078 8319321 ~ 8321009 (-) True LOC118965987
TU875301 lncRNA downstream 173602 8276173 ~ 8276485 (-) True G768425
TU875290 lncRNA downstream 202677 8240270 ~ 8247410 (-) True G768414
TU875429 lncRNA upstream 4450 8459835 ~ 8501302 (-) True G768528
TU875461 lncRNA upstream 33778 8489163 ~ 8489756 (-) True G768554
TU875485 lncRNA upstream 76289 8531674 ~ 8533005 (-) False LOC118966156
TU875486 lncRNA upstream 76289 8531674 ~ 8532743 (-) True LOC118966156
TU875499 lncRNA upstream 120281 8575666 ~ 8575993 (-) True G768591
XM_036987228.1 mRNA downstream 6989 8437178 ~ 8443098 (-) True LOC110531388
XM_036987237.1 mRNA downstream 27836 8418165 ~ 8422251 (-) True LOC118936450
XM_021614580.2 mRNA downstream 49419 8386478 ~ 8400668 (-) True LOC110531390
XM_036987242.1 mRNA downstream 49425 8367682 ~ 8400662 (-) False LOC110531390
XR_005053160.1 mRNA downstream 49578 8356648 ~ 8400509 (-) False LOC110531390
XM_036987225.1 mRNA upstream 34602 8489987 ~ 8533674 (-) False hspa12b
XM_036987227.1 mRNA upstream 34602 8489987 ~ 8533675 (-) False hspa12b
XM_036987226.1 mRNA upstream 34602 8489987 ~ 8533713 (-) True hspa12b
XM_036989243.1 mRNA upstream 75250 8530635 ~ 8532418 (-) False LOC118966156
XM_036987248.1 mRNA upstream 111171 8566556 ~ 8580576 (-) True nagk
TU875321 other downstream 166763 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 197332 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 258189 8189443 ~ 8191898 (-) True G768390
TU874434 other downstream 336017 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 1199012 7245644 ~ 7251075 (-) True G767056
TU875757 other upstream 527083 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 527083 8982468 ~ 8990706 (-) True G768780
TU877415 other upstream 1919324 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 1919324 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 2516988 10972373 ~ 10974413 (-) True G770549

Expression Profile