RNA id: XM_036987281.1


Basic Information

Item Value
RNA id XM_036987281.1
length 4736
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110531425
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10140623 ~ 10213285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAATCAACTCTTTCTCAGATCAGCTGATTCCTACGCTGCCATTTTGTCCGCGGTAGTAGGCAGGCAGCAAGTGGAGACAAGCTGTTTCATATTCCTACATATTCAACAAGACTTGAATAATACTAAAGACGACGATATGAGTTGGATGTCAAGGTTCAGTGGTTTCTGACGGGTGGTTTTTTTTagtagttttttgttgttgttgttgttgccaatTTCATGGATATATCGGACCAAATAGGTTAAATTCAGGTGTTCCTCTCCTAGTACCGGACTCGGAGGAAGCAGGGTTGAGACAGGACGATACTAGGTAGTTAGAGGGTGTTGTGTTAGCAGGAAGGCCGGTCAACTGGCCGCTGTCTTCTCTCCGTCTACATCTAGTCTGAAGCTCAAGACAAGTTGGGAAAGTTTGATAGTTTCACGTTTGCCTATTTTCGTTATGTTTCACTCGAAACCCCAAAAAAGGGACCGGTCTTTTCGAGGTAACCTAAACACACAAAACCTCAGTGGAAGTTGAATTCTGAAGAAGAGGGGTTTTATTTGAGTAGTAACCGTTTTAGCTAGTTTGGCTAAAAACTGTGATCATAATTCAGGGTTGTCTCGCCAGTGGTCTTGTTAAATTGACCCGTAGGTATCCAGCCAGCTAGAGATGTTTATATGTAGCCAGCGAGCTGACATTTCTGTTTACAAATTGCATAGTGGGACTCATTCGTGGTTCGAGTGCAGAAACGGAAATATTAGCTAACACAAAGCTAGTTTACTTGTTAGATGTCaacctttttgttgttgtgtgttttgtttgttactATACAGAATACCTTGTTAAtgatagctaacgttaactagttaGTTAATTGATTTGCTTATTCAATACATAATAACATTGTGTGTCCGGATTTATTTTTTTTAGGttgcaacaaacaaacaaaaaaactaaaattAGTCGGAGATCTTTCAGCGATACTGGACTAGGACGTCATACCACTTCTTTTTAACGGGACCGAATCCCGTGGCCCGAAACCTCCTTGCCATCTCTGGTGTTACGCACGTCAGCTAATAACCAATCGttggacattgtgtgtgtgtgtttatcatcCAACTAATCATAGTGGGTTTTGTAGCGAAACGGTGAAACACAATGTCAGGACAGTCTATAACGGATCGCTTCGCAGCGGCACAGCACAGCATGACCGGGTCTGGTATCAGTAAAGCCGTGTGCAAGGCCACGACGCACGAAGTCAGCGGCCCCAAGAAGAAACACCTTGattaCCTGATCCACTGCACCAGTGAGATGAACGTGTCGGTCCCCCAGCTGGCTGACACACTATTTGAGAGGACAGCCAATAGCAGCTGGGTGGTGGTCTTCAAAGCTCTGATCGCTACACACCACCTTATGATGTATGGCAATGAGCGTCTTATCCAGTATCTGGCTTCTAGAAACACCCTCTTCAACTTGAACAACTTCTTGGACAAAGGTGCTCTGCAAGgttatGACATGTCTACGTTCATCCGTCGGTACAGCCGCTATCTGAATGAGAAGGCCATGTCTTACAGACTGGTGGCTGTGGACTTTACCAAGATGAAGAGAGGGATTGACGGTGTGATGCGCACCATGAGCACAGAGAAGCTCATCAAGACGTTACCGATTATCCAGAACCAACTAGACGCACTGTTAGACTTCCAGGCCAACCCTAATGAGTTAACTAACGGAGTCATCAATGCAGCCTTCATGCTGCTGTTTAAAGACTCCATCCGTCTGTTTGCTGCCTACAACGAGGGTGTCATCAACCTACTGGagaAGTATTTTGATCTGAAGAAGGGTCAGTGTAAAGAGGCGTTGGACATCTATAAGAAGTTCCTGTACAGGATGACCAAGCTGTCTGAGTTTCTCAAAGTAGCAGAGCAAGTTGGAATAGATCAGGGTGATATCCCCGATCTCTCACAGGCCCCCAGTAGTCTCCTGGAGGCTCTGGAGCAGCACCTAGCCTCTCTGGAGGGGaagaagaccaaggagctcaGTGCTGACACCAGAGCGTCCACTCTGTCCAGTGCGGTGACGTCTCTGTCCAGTACAGGCATGTCCTTCAGCCGCATGGACGAGAAGGAGAGACTGCAGGCCTTGGAAGAGGAGCAGGCCAGACTGCAGGCCCTCAAGGACCAGCGTCTGAAGGAGATCGGTGtgtcccttcctccctctgcctcccccagTACACAGTCTATGGGCAGTGTCAACCACAACACCAACCAGGCCATGGAGCTATTCAACACACCATCCACCAATAGcaTGCCCAACCTCAGTAGTGATCTGTTTGACCTACAGCCAGCCTTCACCCCTGTTGTCCAGAGCACTCCTTCCATCTCTACAGCCGCCACTGCCTGGGGAGGTGCCGCTGTGCAAGCTGAGTCCTCCATAAGTGTAGATTTTGATGCTGTTTTTGGGGGCGGGGCTAGAGGAATAGCCAATAACGGCGTGCAGCCAGCCGCTGATGGGTTTGATGCTCTTGGGGACCTGCTGAAGCCCACAGTGTCAAACCATAACCAGGCTCCCCCCATGGCCCTCCACCACCCCCACCCAAGTCACCCCCATCCAGGGTACCACCCAGGGGGCAAGCTGCTGGCCAATGACCTGGACTCCTCCCTCGCCAACCTCGTTGGCAatctGCAGTTCGGAGGAGCCCCAGCCAAGAATTTGTCTCTGTGTGCCCCGGTGTTCAGGCCAGACATGCAGTGGAGCCAGTCTGGAGAGAAGAGACTAACTGGGGGACACAACTGGCAGAGCAAGACCATGACCAGCACTACGGCCTGGAACCCTGTTCCCATGGCCCCCGCGCCCATGCCTGTACAACACCTGAATGGGATGTTCTATGCTGGTTATGCTCCAGCTCCTATGCCTTTCCCCATGACCACACCGCAAGTGCCTATGTATGGAATGGTCCCTCAGATGGGTCAGATGGGGGGTGTACAGGTGATGGCCCCCCAGCCCATGATGTACAACCAGCCTGTACTCAGACCCACAAACCCCTTCTCCCCCATGCCTGGAGCCCAGATGCAGTTCATGTAATTTCATCTGGGGGAGCAGAGCGCCAAAAAAtgatgaaacacacagagaggacaaaCGAAGAATAGGGAAACGAATGaacgaatgaatgaatgaatgaacgaacgaacgaacgaacaaACAAACGAACGAACGAGGGGCAGACAGAAGAAAAACCAACCAACACCAAAtacaagaggagaggaagagggaagaaaaATAAGAGGCTGATGAACCCGGGAGATGGAGGGTAGAGCAAGGAAGAGTGTTTATGATATCATAAAGGCTTACCTCTCTGTCTGAAACAGCCCCCACCCTCAaacaaacaacccccccccccccccccccaccccccccccccaaacaaataAATCAAATGGAACCCCTATAAATGGATAGGTCTTTTGGAGTAGACGGTGTGAAGGGGTCAGGTGTGAAAGGTCATAGGTTCATTACACTTATTACATGGACTTTTCTGTGTTTGTCTTCTGTTACCTTTGGTGTAGATAGATGGATTACACCCTGTTAAAATGACTGGGACTCTTCGATGTTGTAGGTATGTTACTGAGCTGATATTGAGCACTttggcacacacacataaacagacaGAGGTGTGAATCTAACCATGGGAAGAACGGACTGATTTGTCTAGAAATAGATGGGTAGGTTACAGTTGGAGCCATCCTCTCTGGTTGGTGAGATGGTTACAAACCGGTAGGAACTTGTGTTCTGGTTTTCtatctctgagtgtgtgtgtgtgtgtgcacactgtTTATAAAGCATTACTTAGTGAGCTGGTCTCTACCTGCTTTCTTAGACTAAAAGGTCACCAAATTAAAGATGGTGTTTTCCTACTTTCTCACCGTTACCCATCAACAGGGTGGACATGTTTGTCCCTGCTCGCTAGCCGTCCTTGACTGTTTGCTAGTTCAGAAAAAGCACTTACCCAGGGGAGATGTTTCAGACATGGAGAAGCCATCACCAGGTGTAATCagactggatagaaaacattaaggacacccctCAACCCTCACCATCATCCTACCATCAATCAGACTGCatagaaaacattaagaacacccctcaccatcatcctaccatcagactggatagaaaacattaaggacacccctCTACCCTCACCATCATCCTACCATCAATCAGACTGCatagaaaacattaaggacacccctctaccctcaccatcatcctaccatcaatcagactggatagaaaacattaaggacacccctctaccctcaccatcatcctaccatcagactggatagaaaacattaaggacacccctctaccctcaccatcatcctaccatcaatcagactggatagaaaacattaaggATACCCCTATACCCTCACCATCATCCTACCATCAATCagactggatagaaaacattaaggacacccctctaccctcaccatcatcctaccatcagactggatagaaaacattaaggacacccctCTACTCTCACCATCATCCTACCATCagactggatagaaaacattaaggacacccctctaccctcaccatcatcctaccatcaatcagactggatagaaaacattaaggATACCCCTATACCCTCACCATCATCCTACCATCAATCagactggatagaaaacattaaggacacccctctaccctcaccatcatcctaccatcagactggataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877327 lncRNA downstream 10286 10116536 ~ 10130337 (-) True LOC118965989
TU877326 lncRNA downstream 20409 10116536 ~ 10120214 (-) False LOC118965989
TU877303 lncRNA downstream 39777 10100642 ~ 10100846 (-) True G770140
TU877302 lncRNA downstream 40089 10099903 ~ 10100534 (-) True G770139
TU877281 lncRNA downstream 101867 10038190 ~ 10038756 (-) True G770118
TU877358 lncRNA upstream 20832 10234116 ~ 10234358 (-) True G770183
TU877274 lncRNA upstream 24714 10237998 ~ 10238457 (-) True G770112
TU877272 lncRNA upstream 26556 10239840 ~ 10241076 (-) True G770110
TU877361 lncRNA upstream 29688 10242972 ~ 10243256 (-) True G770186
TU877362 lncRNA upstream 30487 10243771 ~ 10244137 (-) True G770187
XR_005053163.1 mRNA downstream 2914 10135529 ~ 10137709 (-) True LOC118965990
XR_005053162.1 mRNA downstream 10178 10117760 ~ 10130445 (-) False LOC118965989
XM_021614628.2 mRNA downstream 152173 9983492 ~ 9988450 (-) True LOC110531429
XM_036987268.1 mRNA downstream 792365 9294764 ~ 9348258 (-) True LOC110531417
XM_021614611.2 mRNA downstream 1033164 9104234 ~ 9107459 (-) True bmp15
XM_021614633.2 mRNA upstream 27941 10241225 ~ 10247265 (-) True LOC110531433
XM_021614635.2 mRNA upstream 49009 10262293 ~ 10273980 (-) True LOC110531436
XR_005053166.1 mRNA upstream 52513 10265797 ~ 10267533 (-) False LOC118965991
XR_005053170.1 mRNA upstream 52786 10266070 ~ 10267529 (-) False LOC118965991
XR_005053169.1 mRNA upstream 52786 10266070 ~ 10267533 (-) False LOC118965991
TU875757 other downstream 1149917 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1149917 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1857299 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 1887868 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 1948725 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 161425 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 161425 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 759089 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 894544 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1415332 11628616 ~ 11629588 (-) True G771457

Expression Profile