RNA id: XM_021614635.2


Basic Information

Item Value
RNA id XM_021614635.2
length 1887
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110531436
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10262293 ~ 10273980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGACGGGCAGCTCTTCAGTAGGAACCCCACGCCCAACTTCTACGTAACAAGAGAGTAGAAAGTCTTTTCCAAGATGGCAACGACCATAGACAGCAGCAATGCCGTACAGGCGACAAGCAAAAAGCATCTCGGAATTCCCGAAGCAATATTTGTGGAGGATGTCGAGTCGTTTATGAAGCAGCCAGGCAACGACACCGCAGACGCCGTACTGCGGAAACTGGATGAACAGTACCAGAAATACAAGTATATGGAGCTCAACTTGGCGCAGAAGAAACAAAGGTTGAAAAGCCAGATCCCACAGATCAAGCAGACTCTAGAAATCCTACGGCACATGCAGAAGAAGAAGGAAACCACAGACCCGATGGAAACACACTTCCTATTGGCTGACAACGTTTACTGCAAGGCGTCAGTCCCGCCCACCGACAAAGTGTGCCTGTGGCTAGGGGCCAATGTGATGTTGGAGTATGACATCGACGAGGCCCAGTCTCTTCTGGAGAAGAACCTAGCGACCGCATCACGCAACCTGGACTCCCTGGAGGAAGACCTGGACTTCCTCAGAGACCAGTTCACCACCACCGAAGTCAACATGGCACGAGTCTACAACTTTGACGTTAAGAGGAGGAGCAAGGACAACCTCCTTAAATCAGTCAAGAAGTCTTGAGAGAGGGGGACCCCCCACAataaatatccccccccccccccccccccagtaaccCGCCCCAACTCCATGTTCACATCTCTAGTCTCTACAACATGTTTGCgacctaaatggcaccctattccatatttagtgcactacatttaaccagggcccatagggtagtgcactacatttaaccagggcccatagggtagtgcactacatttaaccagggcccatagggtagtgcactacatttaaccagggcccatagggtagtgcactacatttaaccagggcccatagggtagtgcactacatttaaccagggcccatagggtagtgcactacatttaaccagggcccatagggctctgggttCAAAGCAgtgcaccacaggaggttggtggcatcttaattaTTCGGCAGGGAGGGAGGGCTCGTTGCCATGGCTGGAGCAGAAACACTACATTCCAGAcatttattatgagccatcctcccctcagcagcctccactgcagtgcactgtatagggagtagggttccatttgggatgtggACCAAGCCTTATTCTATTGATTTGTTactttttaaaagtattttttcaagtaaaaaaaaaaacaaaacaaaagttaCTACGGCAGTTTTTTTGTATTCTTTTATTCCGATTTATTTAAGCACAAATCTTTTTGAACCCCCTGCTTAGTCTTTAGGTTTGTCACGGTCCTACATTTCTTCCTCCTCTCGTTGTGTTTTCTGCCATTTAAGTTGTTGTGTGCTGCTTCTTCTTACGAACTCTTACTGACGTTGATCTTTGCTATGTACTCGTTTGGGGCCTTGGTTTGCTTTCAGAACACATCCTGCTATTACATTACCCATAATCCTCGCTGGGCAGGaaatgggagaagaggaggagcaaTCTCACCAGTTCAAGTTGACACCTTCCTGTGGTTATGAGAATGTTTAAATGTCGAGCCCACTCTCTTGTGGGTTCCGTCCCTCACTCCTAGTCCCTcgactgcatctgaaatggcacgtTATTCCCAGAAGTAGTGCAATAGGTAGTGAATAGGGTCCCATTTCGGATGTAGCCTCTtctgctgcctgtctgtctgtgttttattttatatacctcctgtcttccctcctcctctttctcaacGTCACGTTGTATTCATTAGAATACTGAAGTGGAAAAAAAGAAATgtcaaactaaaaaaaaaaaatcaacattttggGAAAGA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877366 lncRNA downstream 1330 10260507 ~ 10260963 (-) True G770191
TU877362 lncRNA downstream 18156 10243771 ~ 10244137 (-) True G770187
TU877361 lncRNA downstream 19037 10242972 ~ 10243256 (-) True G770186
TU877272 lncRNA downstream 21217 10239840 ~ 10241076 (-) True G770110
TU877274 lncRNA downstream 23836 10237998 ~ 10238457 (-) True G770112
TU877378 lncRNA upstream 8447 10282427 ~ 10296371 (-) False G770200
TU877381 lncRNA upstream 8447 10282427 ~ 10283002 (-) True G770200
TU877392 lncRNA upstream 22884 10296864 ~ 10298349 (-) True G770211
TU877423 lncRNA upstream 54210 10328190 ~ 10328653 (-) True G770228
TU877426 lncRNA upstream 59065 10333045 ~ 10333412 (-) True G770231
XM_021614633.2 mRNA downstream 15028 10241225 ~ 10247265 (-) True LOC110531433
XM_036987276.1 mRNA downstream 49008 10140623 ~ 10213285 (-) False LOC110531425
XR_005053173.1 mRNA upstream 387410 10661390 ~ 10664564 (-) True LOC118965993
XM_036987296.1 mRNA upstream 398008 10671988 ~ 10695563 (-) True LOC110531427
XM_036987301.1 mRNA upstream 517213 10791193 ~ 10885360 (-) True LOC110531422
XM_036987318.1 mRNA upstream 1221562 11495542 ~ 11535435 (-) False LOC110531444
XM_036987315.1 mRNA upstream 1221562 11495542 ~ 11535436 (-) False LOC110531444
TU875757 other downstream 1271587 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1271587 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1978969 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 2009538 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 2070395 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 100729 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 100729 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 698393 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 833848 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1354636 11628616 ~ 11629588 (-) True G771457

Expression Profile