RNA id: XM_036987318.1


Basic Information

Item Value
RNA id XM_036987318.1
length 5908
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110531444
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11495542 ~ 11535439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGCTGTACCTGCTGCGCCTACCGACCGCTCACTCGTTTCTCCACATGCGCACAGCGGCACCACTCTCATTCTCACTGCAGACTTTCCGTTCAGTTGCAGCCAACTGTTCGCCACTGTCGCACAGGCGCCgccaaacaaatattttttaggATCAAAATAGGCTTTCAAGCGGCTCAACGCCCAACAATTCGCTACATTGTAGCAAGCAGGCAGCGAGATAAGAAGATACATCAATTTATCGATACAGTGTAACGTTATTTTATCTCTCGCTTCAGAACCAGTCTCGATACAACGCCGGAACGACAAATCTCAAACATGAAGAAATGTTCGGCGTGGTCGCTCTTTCTCGTGGTTTCGCTGCTAACTGTGAAAGCTCTGTCCCAGAATTCAGATGGCTTAGACCTGTCTGATGCCTTGGATGACGTCTCTATAGCAACAGCAGCCACACCTAAACCAGTAGGAGCAGATGAGGAGATCACCCCCACCAAGGCTCCTCCTAAAGCCCCAGCCACTAAGGCCCCGTCACACAAGCCCAAGCCacCCTCTGATGAGTTTGACCTGAGTGATGCTCTGGATCCCAACAATGACATTGGAGGGAAGGACAAGAACAAGGGACAAGCAGGTGGATCTTTCTCAGATGATGATCTGCTTGACGTTGGGAAAGACGACACCTACAACCCTGACAAAGGCAAAGGTGGACATGGTGGAGGCCAGTCTGCCGCCGATGACAACAACCTTGACACCATGGCTGAGACCGGAACCATCGCCGGGATCATCAGTGCCATTGGCTTGGCGCTGGTTGGCGCGGTCACCAGCTACGTCTCCTACCAGAAGAAGAAGCTCTGCTTCAGCATACAACAGAGCCTGAATGCAGACCTGGTGAAGACTGATAACCCAGATGCTGTGGTGGCCACAGAACCACAAGttcaACAGACTCTTCTGGAGCCCCCCAACGCTGagcctcctagtcaggataacaCTGTCTAATATCCCGTCCGTCCGGCCTCATCCCCCAACGCTGagcctcctagtcaggataacaCTGTCTAATATCCCACCCGTCCGTCTGGCCTCGTCCCCCAACCTACAcaaacacctgcacacacacgaAGAGGGTGTGACAACACACACTTACACGCCCTCACATTGGGGAATATCCCCCCCCACCTCATACgccaacacacactcaccactTTTGAAGGATAGTTCCATCCCCGTTATACCTTAAGAATTGTAGATAGATGGTGATCAGCAAACTCTGTCTGAAATGTAGAGTTCCACTGACAGCCATGTTGACGCCACCAAGTTCCATGTCATTCTAGAATCTTAATGTCATTCTAGAGTGGGAATGGTATTGTGACATCACTATGGTTCGCCGACCTCTGTAGACCTACCCCCCGCCACACTGTGTGTACATATCATTTAATTTATTTGAACTGTTTTAAACACCACTAATATGCCTGTTTACAATTTGATTATGAAGGAATGGTAGCCTAATCCTAGATCAGTTTTTATTTGACAATGATAGTCAGAGGATTTGCTATACTTAAGCACATACAGATCCTGGACCAGGCTTTCATCTTGGTATTTCCTGAAAGATAGTGTGGTACATAGTATAACCCACATTCTTTCCCCCTAACTCTGTTATCCAATCAAAAATCTTAACCAAATAATTACCCCCCCATTCCCCCCTAGTACATATATCCCCCCCATTCCCCCCTAGTACAAATATCCCCCCCTAGAACATATATCCCCCCCATTCCCCCCTAGTACATATATTCCCCCCTAGAACATATATCCCCCTCATTCCCCCCTAGAACATATATCCCCCTCATTCCCCCCTAGTATATATATCCCCCTCATTCCCCCCTAGTACATATATCCCCCTCATTCCCCCCTAGTACATATATCCCCCTCATGTGATTTTTCTACCATTTCTACCTTCATGTTATTGTCCTAAAGAAACAGAGTTTTGCGGTGGTTTCTTCCATACGTTAATGTTTAGAAGCTGCATTTTTATAGCCTGGTTGTCAGTCTGTTTGTGCTTTCTTGCCAACTCCTTATCACTCATTGTAATGGCAGTCGTATGTACTGCATGACGATGACAGAAATAGAATTGATTAGAGCACAACCAGATCTGGGAACCAGGCTAGCACTTTTATAGTGTTGATTTtaggatgttttattttttatgaagCGATGTTCATTAGAAGAACTCAATTACTTACTTACTCTGCAGAGCTGCTGCGTAAATGTCCATGATGTGATTTGCCTTTGTTTTAAGAAACTGAAGAGAATATAAGCTCTTTTCCAATATCCATACTAGCATACTACTTAGGGAACAAACCCGTGTATTGGGTCCTAGCATTCTAAGTAGTATGCTAGGATGGACATTGGAGCACACTCAAAGGCTCTGTTCCAATAGCCACACTAGTGTACTGCTTAGTGAACGATACCAGTGAATTTGGCGTGCATTCTAAGTAGTATGCTAGTATGAATATTGGGAGTGTAGCCTTTAAGTCCACTTGTGTGGaaaatgggaatgtgatgaagatACACAATGTATAAAGACTAGTTAGTATCTGTTTTGTCTTATTGAGATAATGCCTGTGCTAGAGAAAGTGAAGTAAACGTGAAATCGAAGCCTAGTCGAACTTAAAACTTCTTGATATTGAAGTACTGTAACGGTTGCGTCCCAGACTGCATTGCATCAACCAACGGTTGCGAGTCACGTCAGCGAGTGCGTAGCCGGGCATCAGATTGCTATATCAATGAGTTGTTTAGCAGATATGGAACAGATTTACACACCTATCCAGGCGTTGTGACTTCTGGCAAGCTTCTGCAATGTAGTCATCCTGGAACGTGCCCAGTGGTTCTGTAGACTGGACATTTGTTTGACTGGACAAGGCTATACATCGACTTGTGAAGTTCTTCAGATTGAGCTATTTGCTATATGATATCAGAGTTAGTTCATCTCTGTGATTTGGATAGTGTTTATACTAGCTGTTGCTTGTTGTTAGGAAAGGTCGAGGTGAATTACACTCAGTTCACTCAGTTCATTCAAGAAGCGAATTCAAATTCCATGTCAAAAATTTAGAAAATCtttcataaaaaaataaatggcaCATTtcaatttgattttgaatttaaaATCACTCCTTTTGAATTGAATGATTTGAAATGGAATTGGCCCGAATCCTAATTAGGAGACTAGTAAGTGGAATTGGCCCGAATCCTGATTAGGAGACTAGTAAGTGGAAAGTGAAGCTTGTAAATTGCAGCGTGAGCATATTTCTGTGTTCTTACTATTTCGTTGTTGTATGATCGTATTCCTTGATATTATGGTGTATCTTAATGATCTATACACTCGTTCCTAAGTGTGTTTTTATTCAAATAGTTTCCGTCTCTGCTCCCCCACTCTTTCTAAACTAACGTTGTTTACTAGAGTGGCTTTTGTCTTAACTACTTAGCTGAACTTATCTAAATATTGTTTTAGGTATAGAAGGTTTCCAAGTGATTTTATTCCAGATAACATAACAAACCTTTTTAGGGCAGATACTCAAATGACACCctcttccctttgtagtgcactattttattctatatagggaatagggtgtgatttgggatgcACTCCCACTGGAACCTGCGCCCTGTTCTGTTCGGCTCCCTTGTTGCCTTGGAAACGCAGCTCTAGAACCACTCCTCCTGTGAGGTTGAGGCGCTCTCCCTACCTGCGTATACTCTCCGCCTTTAACAACTGCACCAGGATCAGTTACTATCTTACTTATAATAGATGAGATAAAGATTTAGGGTGGAGGAACTGTTGTTAACCCTTTGATAAATAAGGACAGAACATTCCATCCTTTGTCAATCGTTCTTATTAATTCTAGCCGTTGACATCATGAAGGACCGTAGCATTCCGGGATAGGACAATAGAACTGTCCAGAACTTCCACTCTACAAAGGGTTAATAACTGTTAGTCAACattctcctctcctgtcatccAGATGCAGGTGCTGCAGTACTGATGGTGCTTCTCGCTATGCCTTATAACCTGCTGGCTCCCGCAATACTAAACACACAGAACTAGAACCAATAGAATGGAATGTTCAATGAGTAGAATTCAGATTCTATTAGTGCTTTTCTCAGTGTTCTACACATGAAACATTAGTGTGGGAACCACCAACCAAATATCAGTGGTTTGAGGGCCTGTGTCCATTCTATACGTTGTCTTTCTATGGTTAAAAAACACCTCCGTGACAGAGCTGTGCTCACACAAAATAAACAATGAATGTTAAACGAATGTACTTTCTCTAAATCAGTTGCGACAGCGATCGCTCGTAGCAAATGTTCTTAAAACCCACCAAAGATATGTTGAATTGCTGATTTTAAGATTGGACAATATTGGACCTTGGTGTTGTGCTTTGGGTTGAATGTTTCACTCATtgactggcaagtgtcttcctGTACGCTAGTAACATCACATAAAAATCTCAAAATAAAAATCACATAGAAATTCCTTACAAATATTAACTTTTTTTAAACACGGATTCAGACTGTTAGAACTAAGAATCCCCCACCCCCTATCCTTAGAGACAAAGCTTGGTAGAAATTAGACAATTTGAAGAGCAGAGTTGTGTGAGTGAGACTTGACTGTGTGATGAGTACCATCTTCTAGCACTATGGTTTGGAATGGTATTAAGGTGCCTCTTGGTTGCAGTATGGATCATTTGCCTGATTTTGAAAATTAGAGGTGTTTCGAAGATGTAAAAAAACTACTATTTTATACAGTAGTATACAAGTCAGTGAACCAGGAGTTGCTGCATGCTCAATAGTTTGCAGTCTTAAGGCTTTGAGGTTGCCCTTTTGTTTATATGGTTTACGGTAACAGACATATCAGCAGTTGGATCCCCTTAAATCTTGGGTGCTCCTCTACTACACACATGACGGTAACGGGCTATAACAGAACTGTACAGAAATGAAAAGCATGTTTTTGGATATTTAGCTGTAGTCTTTGGAAGTTTTCCTCATCGGGTTATCATTGGGATGGCCTGGGTGCCAGTCTatttctgctctcttgccaactccttacGGCTTGAAAATGacagcaatggagttggcaagtaacaagagcacaaacagatttgGGACTGGAGTGTAGTTGGACCAGAAGTAGTAGTTGGTGAATGTGAGGGTATTTATATACTGCCAGTAAAGTCTAGGATAAGAACATTATGTATTGGACTGTTATGTCAAGAGAAACCAGGAAGGAACTATTCATATGAGCCGATAAGTTCCAATCCAGCTCCAGTCAACGctggctctgttcaaaagtagtgcactagtatCTAGGGAATATGCTGTTATTTCAGACACCTCAGTTTGGTTTTCTGTGCAGATATACTTCCCCTAAGATACGTTATGACATCAATGTCCCATCCTTCTTAATCCTGTTCTAGTGTGATGTCATCCAGTCCTTACACTAGCGTCACTCCAAACCCACTGACCTGTTAGAACACAGGGCTCTTATGACATCACAATGTACATTATGTATTCAGAATGGCCTTCTGCATGCATGGAATCCACGCCTGATTCACTAGTGCCTGTCAAttgacccccacacacacacaattttacaTGTATGCATATACACATACttatgcacgcaaacacacagtTAACAAAGGGCCACTGGTAACTTGGACAACTTGTTATAATACTAAACAGACATGTAATGACAGATTATTCCTATACTGCTGCAGTTCTATACATCTATATTTCACTGCTGTCTCGCTCACTGGCAAATACATTGTGGAACGACGACATTCATACGATCAATCAATGAAACCCAATAAAATTTGAAAAGAAACCCAAAGACTGTTTCTTTTCTTGTATCCGTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU878142 lncRNA downstream 137857 11357318 ~ 11357685 (-) True G770841
TU878082 lncRNA downstream 241466 11252758 ~ 11254076 (-) True G770784
TU878077 lncRNA downstream 256883 11238247 ~ 11238659 (-) True G770779
TU877962 lncRNA downstream 261830 11233501 ~ 11233712 (-) True G770689
TU877959 lncRNA downstream 264779 11230491 ~ 11230763 (-) True G770686
TU878293 lncRNA upstream 12413 11547848 ~ 11551525 (-) False G770982
TU878292 lncRNA upstream 13243 11548678 ~ 11551525 (-) False G770982
TU878294 lncRNA upstream 13243 11548678 ~ 11551525 (-) True G770982
TU878300 lncRNA upstream 17267 11552702 ~ 11552914 (-) True G770986
TU878334 lncRNA upstream 17666 11553101 ~ 11553442 (-) True G771017
XM_036987301.1 mRNA downstream 610182 10791193 ~ 10885360 (-) True LOC110531422
XM_036987296.1 mRNA downstream 799979 10671988 ~ 10695563 (-) True LOC110531427
XR_005053173.1 mRNA downstream 830978 10661390 ~ 10664564 (-) True LOC118965993
XR_005053168.1 mRNA downstream 1227839 10266070 ~ 10267703 (-) False LOC118965991
XR_005053164.1 mRNA downstream 1227844 10266070 ~ 10267698 (-) False LOC118965991
XM_021614655.2 mRNA upstream 123229 11658664 ~ 11660833 (-) True LOC110531450
XM_021614661.2 mRNA upstream 162957 11698392 ~ 11701613 (-) False LOC110531452
XM_036987329.1 mRNA upstream 206476 11741911 ~ 11750227 (-) True LOC110531453
XM_036987330.1 mRNA upstream 223710 11759145 ~ 11788765 (-) False LOC110532912
trnal-aag mRNA upstream 434734 11970169 ~ 11970250 (-) True trnal-aag
TU877895 other downstream 387383 11107828 ~ 11108159 (-) True G770627
TU877807 other downstream 521129 10972373 ~ 10974413 (-) True G770549
TU877415 other downstream 1119688 10374709 ~ 10375854 (-) False G770225
TU877419 other downstream 1119688 10374709 ~ 10375854 (-) True G770225
TU875757 other downstream 2504836 8982468 ~ 8990706 (-) False G768780
TU878909 other upstream 93181 11628616 ~ 11629588 (-) True G771457
TU878914 other upstream 162964 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other upstream 162964 11698399 ~ 11701583 (-) True LOC110531452
TU878944 other upstream 223803 11759238 ~ 11776612 (-) False LOC110532912
TU878946 other upstream 250346 11785781 ~ 11788569 (-) True LOC110532912

Expression Profile