RNA id: TU879159


Basic Information

Item Value
RNA id TU879159
length 1306
lncRNA type read_through
GC content 0.38
exon number 2
gene id LOC110531465
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12092145 ~ 12144786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCACACCTTTGACGTTCTGGTACTACTGAATTCAAAGCATTGCTGACATTAATTGTATATTATCATGATGGTTTAAGGTTGCAAAGTGAACTTTCCCAAAATTCTcaagttttccagaaatcctgtatGGTGGATTCTGGATTTGTTGTTAAATCCTGTCTGATTCCTGGGGTTATACAACTATTTTAGGATAACCTGGGAATTTTTGGGAAGTTACCGGAATATTGCAACCGTAATGTATATTAGCTCTGTGAAAATCATTCCACTTTTGGCTGGAAGATTTATCTATTACTACTGTAATGTAACCCAGATttgggttcaaatagtatctgAAAATCCTTCAAGTACTTCCAGCGTTTGCTTTGGCCTGCCTGGAGAccattctattggttccattgtgccaggaAGTTTAATCAAGCTCGACTTTAAGTATTTGAAATGGTTTTAGAACCCAGGTCTGATTTGACCTTTGACATTTCCCTCAAAAGAGGCAGGTCAGAACACATCTCAAGCCTTTTTATAGCTGGGGATGCAATTAAACATCAAAACATCACTGAACAGGTTACTTTTGATCAGACTAGGGTTGCGTtgccaaatggcaacctattccctatatatagtgcatatgggctctggtcaaaagtagggcactacatagggaatagggtgccatttgggggacaTGAATTTGCTTTTAAATAAATggctgttttaaaatgttttgtatATGGACCACATGTTATGagattattattaataatagtaatataatacGTTTGCTGTTTTTAAGGGAACACATTGATTGTCTGCGTTGGTGAGCTTTGTTGAACCTATAGTAGGATCTTGTCAGGGAACAAAAAGAAGTAACCTTGACATTCATATAAAGAGGAAGGGAAACCATCTGAAAATGATTCTACCCAACATTCCAGTTCCATCCAGAGTTCCTTTAGAATTCTAGTTCTGTGTTCTATTCCGGAACTGTTTCAGaccatctctctgtcttgctctcttgTGTTGAGCAACTAACCTATGGAGAAGTCTGTGCCGTTTTAGCCCTTGTGTGGATGTGCTAACATGAATGTGTTTAAAGGGTGCAACGTGATGGTatatgatgaagatgatgatgattcaACTTAGTTAAAACGAACACAGGGCAAAAAAGTGTCGGTTTGTTTTTGAACTGCAATGCATAAAAATGTGAACTACTTTAAGATGCATGTGACTTTTTTTTGAGAAATACACCAAAAAAAATGGACCTAGCTACCATTCctatatacacacacacacacgcacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879178 lncRNA downstream 3366 12088459 ~ 12088779 (-) True G771679
TU879177 lncRNA downstream 5880 12085968 ~ 12086265 (-) True G771678
TU879174 lncRNA downstream 11572 12080363 ~ 12080573 (-) True G771675
TU879171 lncRNA downstream 15751 12076093 ~ 12076394 (-) True G771672
TU879167 lncRNA downstream 18690 12072880 ~ 12073455 (-) True G771668
TU879200 lncRNA upstream 10013 12138383 ~ 12172572 (-) True G771697
TU879228 lncRNA upstream 57116 12185486 ~ 12185735 (-) True trnas-uga-2
TU879230 lncRNA upstream 58710 12187080 ~ 12187426 (-) True G771725
TU879231 lncRNA upstream 59301 12187671 ~ 12187909 (-) True G771726
TU879232 lncRNA upstream 59871 12188241 ~ 12188777 (-) True G771727
trnal-aag mRNA downstream 121895 11970169 ~ 11970250 (-) True trnal-aag
XM_036987330.1 mRNA downstream 303380 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 341918 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 390532 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 431312 11658664 ~ 11660833 (-) True LOC110531450
XM_036987352.1 mRNA upstream 19124 12147494 ~ 12153010 (-) False LOC110531459
XM_021614669.2 mRNA upstream 19124 12147494 ~ 12153015 (-) True LOC110531459
trnas-uga-2 mRNA upstream 57262 12185632 ~ 12185713 (-) False trnas-uga-2
trnaw-cca-4 mRNA upstream 70337 12198707 ~ 12198778 (-) True trnaw-cca-4
XM_021614680.2 mRNA upstream 307970 12436340 ~ 12441768 (-) True sox19b
TU879101 other downstream 120791 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 203430 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 303576 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 315533 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 390562 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 865899 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 865899 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1461883 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1568809 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1851958 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile