RNA id: XM_021614680.2


Basic Information

Item Value
RNA id XM_021614680.2
length 3420
RNA type mRNA
GC content 0.45
exon number 2
gene id sox19b
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12436340 ~ 12441768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGAAAAACCCGACGAGTGAAAGGGAAGAACTTTTTGTCATCACGCAGGTCTCTTCAGTTTGAGAGAATCGAAGCGCTACAAGTGGTTGTCTGCAACTGCGCCGAGAACCTGCTGAAGGAGTGTTTGTTTTTAAAACAGCGCAAACATTTCGAGTTTACTTTTCTCTCCCATGATTAACTGGTAATTTAATCCCTGTGGTTCGAAGCGGGTGTGTTCTTATTAGTTAATTAGGAACACTTGGTGCGTTCGGCTTCGCCTTTAACAGGCGACAGAGGCTGTGACTGTTTagttataatttttttaatttgatttattttgaacTGAGACACTTTTTCAAAGTTCCAAACAATGTATAGCATGATGGAACACGAGCTGAAGCCTTCTgggcaacaacaacagcagcaccaccaccaaACGGCCCAGGGCATGTCCCCGGTCACTGGAAACATTGGCAACTCTCACCTGGGGTCCAAACCCGTGTGCCCTCCGGGCGGGGACCCAATGGACAAGGTCAAAAGGCCCATGAATGCCTTCATGGTGTGGTCCAGGGGCCAGCGCCGCAAGATGGCCCAGGAGAACCCGAAGATGCACAATTCTGAGATCAGCAAGCGGCTTGGCGCGGAGTGGAAGCTGCTGACCGACGCCGAGAAGCGGCCGTTCATCGACGAAGCCAAGCGCCTCAGGGCAGTGCACATGAAGGATTATCCCGACTACAAGTACAAGCCACGGCGCAAGACCAAGCCCCTGCTCAAGAAGGACAACCAGATGGCGAAGTACCCTCTCTCCGCCGGGAACCTGCTGGCTGCAGCGGCCGCGCAGGGCCAAGGTGGGAGCGCCAGAATGGAGAGCTACGGGTGGGGCCCGGCGGGAGGTTACGCTGGGATGCAGAACGAGGCCCTCGGCTACACTCAGCAGCTGCACCGCTATGACCTGTCCGCCCTCCAGTATCCCCAGGCCATGACTGCAGCACAGACGTATATGAATGGAGCCAACACCTACAGCCCCATGTCCTACAGCAGCAGCACCCAGCAGCCCAGCCCGGTCATGTCCATGGTGAAGCCAGAGCCAGTATCACACTCCCCGACTGGTGGACCTAACCACCACCGCGGGCCTCTCCAAGGGGACCTGAGAGATATGATCAGTATGTACATCCCCGGGGGGGACGCCAGTGACCCGGCCGCCCAGAGAGGAGGCTACAGTGTCCAGCAACACTATCTCAGTGGGACCGTTCCCCTCAGTCATATCTAGGGACCAGTGGGGGTAGTGACTGGGACTGATCATGGTTGTGCCCGGACACAAGTTAAAACGCACCCCCGGAACTGAACACCACAGCCTTAGACACACTCATTACGGTTCCGTGTTGCATTAAAAACAGCAGTGACTTTATAGGAAAGGTTATTTTTCTACCTCTGCAATTTTAAATAGAATCCCTTCGTCCGTCCCAAGACTGGGTGGTTTGTTCATTCTCCCATCCACTGTTTGGATGGAGACCTGTCCCTTCTCTTTGAACTATGAAGGACTGCTGTATTGTACATACGATCTTTACTTCTCTCCATGATGACAACGTTTGCTTGTGTACatattatattttttttctctttgaCAAAACTGACCTTGACATCCACAATCTTGGTTCAGAAACTCCCAGGCTCTATGTATGTTTCAAGACTCCATAATGTTCACACCATTCCATTGTATTCTCCTACTGGCACGGTAGCGTCGGCCCCTTGGGTTGATGGGTAATCATCACGACCTAAACCAACCGGGATGGAGACACGActtctctcaaatggcaccctattacccatCATGCACAAATTAGGATCcgagcactatgggccctggtcagaagtagtgcactataaagggaataggatgccatttgggatgcaagcacAAAACCCACAATGGAGGGGCCCCACCACAGGAACACAACACACTGGGAACTGGGTTAGCCAATCAAGGTCCTCCAAAGGCCAGTGACATACAAATCACATGACCTGCCACAAGGCTTGAAAAGATTCTGATTCCAGAACTGGGCGTGTGTGTGGCCCAATGGGGCCTCTCTCAAAACGGATCATCTCAAATCAACTAGATGCCTACTAGTGAAGTGGAGATGGAGAAATGCACATAACTTGAATgaagtgatttatttttttatatgtaTGTATGGCCTCTTTGTTATGTGCTCTTGTTTTTAAAGCCAATCCAATCCCATAGGATGACATGGtatagtctgttgtccaatctCATGAGTTCACTGAATACAATGGAAAACAGTACATGAAATGATTTTAACTCCTGTTTAGTAGCCACAACTGTCCAAACCACATACCAATGCATTTTAGTTTAGTTTGAGTATAAAATGTTTAacataacagcatggtttaaAGTTAACATTACGTCTTGTTCCTGCAATGAGTTTTAATGCACCATATTATTGTTTGTTAGTCAACTATTTTGACCctttttttgtaaatgtttgGAGTTACGCTGCTGGCAAAGTCCCAAGTTGCTATACTGCTTACTGTTCAAATAATTCTGCAGGTTTTAACTTTGTTCATAGAACACTCTTAACTGTTATACAAATTCTACATTCCATTTAATTGTTTACTTCAGCTCAAAGTTTTAGCTAGATATTTTTTACCAAATACATGTTAATAACGTTCTCTAGTTTGGCAACTGTGTGTGGATTTCTACTCTTTAGACTTGTTCAACCAAGCACTGTTATGACACACTGCCTGGGCAACTAACAGTGGAGAATACAATTAATTTTATTTTACAATAAACTTCTGTTATCCAACTTCTCACGTTTTGTATTCGAGCTGTCAGTTGTCTGCTTGAGGTATATATATTTCAGATACCGTGTAACATTttcctattattctacaaaaggAGTTTATCTCAAGTTGCTTGAACAAGACTTAGGGGGTGATGGTTAATGTTCCTTCATTTGGCAGCCCCTGCTAACCCACATTTCTGATAATTTAGTCGACCAGTGCTGCTTAAAGTTTTTTATATATAGTAAAAAatgtctgtctgatagaacttgTCATGTTTTGACAGTCTCCTAGTATTGTGCAATACAAACATGAACTTGGTTGCATTGAAATGGAAATTAGTACCTAATAACTTTTTATAAGTTGAGTTAGGGTTAATTTAAATTAATAATCAAACACTGTTTACATTGCAGTCCAAGTGTGTTAAACTGAATTTTATTCTGTTTTATTTAGGTCaatcctgggtgtgtgtgtgtgtgtgtgtgtgtgtatatagtgagGAAAAAGGCTTGCAACTTGATGTGCATAGTGTATACCAATTAAGGCCCTGATACTaaggttttagatttttttaaactcATGTTCACATGTGGCAAGGATGACAAGTATTAATAAAAATTACAACTCTGGTCTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879351 lncRNA downstream 19496 12415730 ~ 12416844 (-) True G771840
TU879347 lncRNA downstream 22545 12412512 ~ 12413795 (-) True G771836
TU879341 lncRNA downstream 33204 12402395 ~ 12403136 (-) True G771830
TU879340 lncRNA downstream 34095 12401798 ~ 12402245 (-) True G771829
TU879306 lncRNA downstream 74440 12327393 ~ 12361900 (-) True G771798
TU880271 lncRNA upstream 20624 12462392 ~ 12462606 (-) True G772599
TU880280 lncRNA upstream 39691 12481459 ~ 12481903 (-) True G772608
TU880292 lncRNA upstream 67453 12509221 ~ 12509435 (-) True G772619
TU880293 lncRNA upstream 67958 12509726 ~ 12509981 (-) True G772620
TU880294 lncRNA upstream 68281 12510049 ~ 12510423 (-) True G772621
trnaw-cca-4 mRNA downstream 237562 12198707 ~ 12198778 (-) True trnaw-cca-4
trnas-uga-2 mRNA downstream 250627 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 283325 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 283330 12147494 ~ 12153010 (-) False LOC110531459
XM_036987357.1 mRNA downstream 291554 12126227 ~ 12144786 (-) False LOC110531465
XM_021614681.2 mRNA upstream 27037 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 29208 12470976 ~ 12471118 (-) True LOC118966197
XR_005053466.1 mRNA upstream 31900 12473668 ~ 12473792 (-) True LOC118966200
XR_005053465.1 mRNA upstream 33739 12475507 ~ 12475649 (-) True LOC118966199
XM_021614682.2 mRNA upstream 42993 12484761 ~ 12507741 (-) True senp3b
TU879101 other downstream 464986 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 547625 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 647771 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 659728 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 734757 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 552501 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 552501 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1148485 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1255411 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1538560 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile