RNA id: XM_021614681.2


Basic Information

Item Value
RNA id XM_021614681.2
length 3070
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110531476
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12468805 ~ 12479392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCGCTAGTTTGGTCATCACGTTGACGTATATATAAGGTTCCTACCACATTCTCATCCTTTGTGATAATGTCGGCTGAGTATGAAGATAGACCTCCCAGAGACAATGGCCCAGAGGGCATGGAGCCAGATGGGATCATTGAGAGCAACTGGAATGAGATCGTGGACAGTTTTGATGAGATGAACCTGGGCGAGAAGCTGCTCAGGGGAATCTATGCCTATGGTTTTGAGAAACCCTCCGCTATCCAGCAGAGGGCTATCCTCCCTTGTATCAAGGGTTATGATGTAATTGCACAGGCTCAGTCTGGTACTGGGAAGACTGCGACCTTTGCCATCTCCATCCTGCAGCAGATTGACATGGAGCTGAAGGGCACACAGGCCCTGGTCTTGGCCCCCACCAGAGAATTGGCTCAGCAGATCCAGAAGGTTATCTTGGCCCTGGGTGACTACATGGGAGCCTCCTGCCATGCCTGTATTGGAGGGACCAACGTCCGTAACGAGGTCACCAAGCTGCAGGCTGAGGCCCCTCACATAGTGGTGGGGACCCCTGGTCGCGTGTTTGATATGTTGAACCGCAAATACCTGGCCTCCAAGAACATCAAGATGTTTGTGCTGGATGAGGCTGATGAGATGTTGAGTCGTGGTTTCAAGGACCAGATCTACGAGATCTTCCAGAAGCTCCCCACCAGCACGCAGGTGGTGCTGTTGTCTGCCACCATGCCCCAGGATGTCCTGGAGGTCACCAAGAAGTTCATGCGTGAGCCAATCCGCATCCTGGTCAAGAAGGAAGAGCTTACCCTGGAGGGTATCCGACAGTTCTACATAAATGTGGAGAAAGAGGAGTGGAAGCTTGACACCCTGTGTGATCTCTATGAGACCCTGACAATCACCCAGGCTGTGATCTTCATCAATACTAGGAGGAAGGTGGACTGGCTCACTGAGAAGATGCATGCCAGGGATTTTACTGTGTCCGCTCTGCACGGAGACATGGACCAGAAGGAGAGGGACTTGATCATGAGGGAGTTCCGTTCAGGCTCCAGCAGGGTTCTCATCACCACTGACCTGCTGGCCAGAGGTATTGATGTCCAGCAGGTGTCCCTGGTCATCAACTATGATCTGCCCACCAATAGGGAGAACTACATCCACAGGATTGGTCGAGGGGGTCGTTTTGGCCGCAAGGGAGTTGCCATCAACATGGTGACTGAGGAGGACAAGCGCACGCTCAGGGACATCGAGACGTTCTACAACACCACTGTTGAGGAGATGCCCATGAACGTGGCTGATCTCATCTAGATTCTGGAAGATTTCCTTCTGCCCCGTCCCAAaccttctgtcccctctctccaatCCCATTGGCTTCAACAAAAAAAACTCCAATCACTCATCCTGGAGCCCCCTCCCCCCCTTGACCTGAAATCTGATCCTATTTCACCTTTGATTCCTATTCTTGTGATTGAATACCGACTGGTATTTAAACTCATTACAAATGATTTTACTCTTACACTGggggttttgtcttgtcttcataGCCCTTCACGGTATTCTTGTCAGGTAAGTATAGTATAGCTTAAGTTCCACCACACCTCTTTCCAAAGTGAAAAATGCATTGTCCATGGGGTTGTTCCTCTTTGGTTTTTAAACCCCTGACACCCTGAGATGGTTCTAAATGATTGGGTGCCCAAAAGCACTAAACACTGAAGTTTAGAACTGACACTGGGTGATACGTTTTAACTCCCCAGAGTTTGATAGAGGGCACACATGCATCTTTGCCGTAGTGGCTTTTGTGCAtttttagttatttagcagatgctcttatccagagcgtcttacaggagcaatttctgttaagtgccttgctcaagggcatttTTTTCAGTTGTCTTGGGGTTTCGGGCCAGTAATCTAACGGTTGCTGgtaacgctcttaaccactaggctacctgccgtctgtGCCCTCTATTTAACTTCATGGACTGACCTGACCACCTTCGTTGTGGTTGTCTACACTTTACCCCCAATTGATGCAACTTCATGGCATTTGTGTATAATGTTGGGAAGTGACTAGCTTTTAGTTAGGGTGACTCTCTGGCTGCATCTGacactgcaccctattccctttatactgCACTATGTAGGCTACAGGGTGCAATTTTGGATGTGACCTCACTATTGTGACGTGCTTCATTGATCTTCAGTCAGTGGGTGTTAATAGTTAAGTGTGATTATAAAATTACTATTGCCCTTttggggggggatcttggagaAGTTATTACTACCAGAATAGTACTTCAGAAAAGACTACAATGTATCCAACTGATATTGGTATCCAACTCTTCTTGGGAGGTGGGTTTTAAAGGGGTTCAAGGAGCAGCatcaacaaataaaaaataaaatgtagagAAGTGATCATGAATGAGTATGAAATGTTTCCTTGATCCTGATCTCGGCTGTGTGATTCTCTTGTTTATACTTTATCTTTTTGTATAGTCCGACGTTAGGTAGCATTTTAGTTTGAAGCCTGCCGTGTATTGGTGGGGTGACAGGGCGACTGCTGCTCAAGGCAGAAAATGTGACATTCCAACTTTTCCCAAAAATTCCCAGATTTTCCACCAATTGCGGTGGAAGGGTTCTGCAGCCCTACAGAGATCCAGCTATGCCTTGTTTCCAATTGTCACAAACCCGGTTGTGAGGATTATACGTTTCACAGGCTACTTCCTTTAGTTTATCATTTTCTTTCCAGAAAGATTCGATTTGAAAGGGTCACTTTTGTAACCTGCCTCACCAAACTGTTGGAGAGGTCTTTATACGAAGGACCAACCTACAAATGAGGGCGATTGTCTTTTATTTTTTCGTTTGATAAAATTGCCTGTCACTGGGTGGGCGGGGAAAGGAATGTGCAGAGTTATTGCTTGGTCAGTGCTATTTTTTAACTGAATTTATTAAAGGAAATGTGATTGTTAACATTTTTTTGAGACGGAAGCCGTGTACCAAATTTTCTACATCGGGTTCTGTATAGTATTTATTTTAATGGtcttaaataaaataaaggtaTTTCTCCTTTTTAACAAGAA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880271 lncRNA downstream 6199 12462392 ~ 12462606 (-) True G772599
TU879351 lncRNA downstream 51961 12415730 ~ 12416844 (-) True G771840
TU879347 lncRNA downstream 55010 12412512 ~ 12413795 (-) True G771836
TU879341 lncRNA downstream 65669 12402395 ~ 12403136 (-) True G771830
TU879340 lncRNA downstream 66560 12401798 ~ 12402245 (-) True G771829
TU880280 lncRNA upstream 2067 12481459 ~ 12481903 (-) True G772608
TU880292 lncRNA upstream 29829 12509221 ~ 12509435 (-) True G772619
TU880293 lncRNA upstream 30334 12509726 ~ 12509981 (-) True G772620
TU880294 lncRNA upstream 30657 12510049 ~ 12510423 (-) True G772621
TU880295 lncRNA upstream 31464 12510856 ~ 12511070 (-) True G772622
XM_021614680.2 mRNA downstream 27037 12436340 ~ 12441768 (-) True sox19b
trnaw-cca-4 mRNA downstream 270027 12198707 ~ 12198778 (-) True trnaw-cca-4
trnas-uga-2 mRNA downstream 283092 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 315790 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 315795 12147494 ~ 12153010 (-) False LOC110531459
XM_021614682.2 mRNA upstream 5369 12484761 ~ 12507741 (-) True senp3b
XM_021614685.2 mRNA upstream 72733 12552125 ~ 12562236 (-) False LOC110531481
XM_021614683.2 mRNA upstream 72733 12552125 ~ 12562614 (-) True LOC110531481
XM_021614686.2 mRNA upstream 86990 12566382 ~ 12583501 (-) False LOC110531482
XM_021614687.2 mRNA upstream 86990 12566382 ~ 12583501 (-) False LOC110531482
TU879101 other downstream 497451 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 580090 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 680236 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 692193 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 767222 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 514877 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 514877 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1110861 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1217787 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1500936 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile