RNA id: XM_021614696.2


Basic Information

Item Value
RNA id XM_021614696.2
length 2419
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC110531492
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12856566 ~ 12876446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACTGTCAGTCAGACGATGGGGTGGAGAACCATTCTATTACTAACAGGGCTGTTTTTACCCTCTCCATGCCTCCCTCAGTACCACTTTGTGAACATGGGCAAGAACTGGAATGAAGCACAGAGATACTGCAGAGAGAAGTACACTGACCTGGCCACCATAGACAACATGGAGGATATGAACAGACTGATCAACACTGTAGACAGTGGTTATAATGGATCAGCCTGGATAGGGTTGTATAATGGTGTTAACAGCTGGAGGTGGTCTCTAGAAGATATGGACTACTATGGTGAGGGAGAGACTGAGTTTAGGAACTGGGACAGTTCAGATGGTAAATACACTGATCAGCACTGTGTAGCGACAGGAGAGTACGGGACGTGGTGGGATCTCATTTGCAACCAAAATCACCACTCGGTCTGCTACAACGGGAAGACAACCATCATTTCTGAGAGGTTCATCTTGTCAAATGAAGGTATGACGTGGGATGAAGGGCAGAGCTACTGCAGACAGCACTACACAGACATGGCCAGTGTGAGGAACCTGGCTGAGAGCAGGAAGATAGGGAGCATTGTACCGAAGGGAAACTGGGTGTGGATCGGCCTGTTCAGAGACTGGAGCTGGTCGGACCAGAGTAACTCTTCATTCAGATACTGGCGTTCAAGAGCACCCAATAATCGCTACGGGAACTGTGTGTCGATGTTCGATAAATCAGGCAAATGGGAAGACTACACATGTGGAACAAAACTTCCCTTCTGTTGCTACGGTGCTCCCGCAGTGACgaagactcagcaggtggtgCGAGTGAAGCTGACCCCAAAAGACCAGAACATGGTCCTGACTGATCCTGCCATTCAGGAAGCCATCTTGCAGCAGATAAAGAAGGAATTGACTGAGAAGGGGATGTCTGATGATGTCAAATTGAGATGGAAGGAGCAGCCTGATGGGAAGATCTTCCACAAGGAAGAAAAGGGGAAGAAGTAAGAAGGAGAAACTGAACCGAGTATGAAGCTGTAAATACTATTACAGTAGAGACTAAGGGGACTTTTCTGACCAACATCCCATTTACAGCTCGACTTGCCAAAACCCTGAAAACTAACCCTTACCGTAACCCTAACAATATCCTTAACCaaccccctaaccttaaccaaacaCATAACCAATGacgtatataaaccctggattgttgatgctacagtatttattggccattgagagactttgaagccaccggtcggccatattggcactccctagtaggagcagtcctccaatGGAATTGAatagaattctacagtatttcaattaaaatggacaaaatgacatgtttttaagtatgttttgttgtagtggggacaggaACATTAGTACTCTCCAAAAATAAATACTTTACGgaatgtttttaaaatatattgtttCAATTTTATGTTCAGCTTACATAGTATAATtttaaagtatgcattaaggtgtctgttaTAGAATAAATATGTCAAAAcggatgtagacattaataaatgcatttctatagcttccaaaatatttttacaATTGGGGAGGAGTGCCAAGATAGCTGCACCAGTAGCTTGAATACAGAGCACGATGCCAGTCATCCAGGGTTTGTACACATCATAGCACGTAACCCTATTCTTAACCCTAACGTTCACCTGATTCTAACCAATTTGGATATTAAATATTGTCTTTCACCTCAGTCACGTCCCCTTAGTTTTTTCTTACTGTCTCATATCCCTTATATTCTAATTTTCACACTCTAGCCAGTAGTTATTTTGTAATAATGATACATTATGTCAAATTGCATTTGGATTGGGTTTTCGCACTTAATGCTGTTATGAATTGTTCAAACTATAATTCCAAGACATGTCTAAATGTTTCACCTTTCTTGTTACTGATTCAATGTATTTACTTTACTTGTTATTTCTCAGTTTCTAAGAGTACACAACTATCTTAACATGAAACTGTGTGATTGATAGAtagtaacatttttttttaaatgttttaactactttatttttattatgaTTCATAATTATTTTCATATGGTTTATAATGTATTTTTAAACCATTCTTACAGCGATGTTATTTCCATTTCATACTGCATTTCTACTCTAgtatggatatacagtatataaacatgTTAACAAATAATTGTCTCACTCTTTAAACTACTGTTGGTGTAATTACATTAATGAAGTGAAATACGATTGAAGTCAATTCTGAGTCTGACATGGTTGATTAGAAGTTAAGAATCAGCAACTTTATATTACCGTACCGTAATGTCATGTTTAATAGATAACTACTCATCACAACCACAAAATACAACAGTAGGGTTCAAATCAACAGTGTTTTACAAACTATAGGGTATGATATGTTTAAAAAAACACGTTTTCAACATTAAATCTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880489 lncRNA downstream 10812 12845531 ~ 12845754 (-) True G772803
TU880488 lncRNA downstream 11172 12845096 ~ 12845394 (-) True G772802
TU880484 lncRNA downstream 15681 12840210 ~ 12840885 (-) True G772798
TU880482 lncRNA downstream 17911 12837266 ~ 12838655 (-) True G772797
TU880436 lncRNA downstream 91845 12758490 ~ 12764721 (-) True G772753
TU880553 lncRNA upstream 63348 12939794 ~ 12942007 (-) True G772857
TU880562 lncRNA upstream 86977 12963423 ~ 13012014 (-) False G772863
TU880563 lncRNA upstream 86977 12963423 ~ 13012014 (-) True G772863
TU880630 lncRNA upstream 203326 13079772 ~ 13084925 (-) True G772914
TU880641 lncRNA upstream 225583 13102029 ~ 13102298 (-) True G772924
trnaa-ugc-29 mRNA downstream 202777 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036987361.1 mRNA downstream 221338 12595885 ~ 12635228 (-) True LOC110531484
XM_021614686.2 mRNA downstream 273065 12566382 ~ 12583501 (-) False LOC110531482
XM_021614687.2 mRNA downstream 273065 12566382 ~ 12583501 (-) False LOC110531482
XM_021614683.2 mRNA downstream 293952 12552125 ~ 12562614 (-) True LOC110531481
XM_021614711.2 mRNA upstream 89687 12966133 ~ 12983100 (-) True ripk3
XM_021617078.2 mRNA upstream 136266 13012712 ~ 13014459 (-) True LOC110532921
XM_036989250.1 mRNA upstream 243551 13119997 ~ 13139049 (-) False LOC118966159
XM_021614714.2 mRNA upstream 335069 13211515 ~ 13217001 (-) True LOC110531504
XM_036989186.1 mRNA upstream 473674 13350120 ~ 13367152 (-) False LOC110531502
TU879101 other downstream 885212 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 967851 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1067997 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 1079954 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 1154983 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 117823 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 117823 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 713807 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 820733 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1103882 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile