RNA id: XM_036989250.1


Basic Information

Item Value
RNA id XM_036989250.1
length 7515
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC118966159
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13119997 ~ 13139049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTGAGTCAGAGCCACCACCTCAGATACTATGGGAATCACACCCTGCTCAGACGGTATCTATTTCTCCACTTCCTGACATAGACCCTGAGGAATCAGAGTCAGTTCTGAAGCTGGAGACAGCCCCATGCCCTGAGGTGGACCCTGAAAACACAAACTCTGACTCAGTTCCATGTCAGACACAAGAGGAATTCGACTCGGCACAGAAACCATCAGAGCAGCGAGATCCAGTCCCAGGTTTGATCCTGCTGACTGATCTCTCCTTTACAACTGTGTCAGAGACAGCACTGTGTCTAGGACCAGAACTAGACCCATATGACATGAGGGGCTCTGAGGATCCCATATCTGCTTCAGAACCACCTCAGATAGACTTGGAACCAGACCCTGAGTTGGTGTCTATGCCCAGGCCTACTCCTCATCTTCACGTAGATTCCAGAGAGCTAGAGGCTACGCCGAAGCTAGGGCCAGACCCAAGCCCTGACACAGACTCAGAAAACCCAAGATCTACAACAGAGACACCGCCTGAGCTCCAAGGGGAGCCCGACCCAGCCGAGATACCTTCAGAGCAGCCGGCCACAGCATTGAGCTCTATGTCTGAATCTGAGGTTGACCTGGCCTCTCCAGCTATGAACCACAACTGCCCTCAACCAGGCCCTAATCACCCCTCAATGACCCCCCAACCGAGGACTAATTTCCTCTCACTGGCCCCCCAGCTACGCCCGAACCACCTCCAACCACCACTGGACCTCCAGCTCGGCCCAGGCTTACCTGGTCATCTCCCTGGGATGGCTGGTTCCATCCCTGGTTCTATCCCCAGCCAGCCCCTACCTCCCCAGGCCTGGTGTCGCAGCGAGGGCTCCTCCTCCCGGGGGATGTTTGAGAACTACAGGTGGTGGCAGAACCTCCGAGACATAGCCAGCAAAATCTACCCCGACAGTGGGCCTGACGCAGAGGCCCTGGCCTGCTTCTTCATtcCAGTGATTCGTTCCCTCTGTCTCAAGTACCCCTCGCTCCTCTTCACCCAGGGCATCGGTATAGCGGTGGGAGAATGGGGGAAGCTCTCTAACTACGACCGTATGGAGTACTATCACTTGGCCCAGAAATTTGTGGAGCTTGAGgtggaggaggtgacagctaaGGAAAGGTCAAAGGTCATACAAAGGTCACCGTCAGGTCAGAGTGGAGCCCAGGCTGAGTTGAAAGGTTACACGGGGAAGAGCAGTGCCACCACGTCAGCCAAAGAGACAGAAACCAAATGCAACACAAGAGTTAACCAAGCCAAAGACAAAACTCAGAGGGCCACTAAGAGTGGCAGTGGTCCTAGAGTGTCCCGTGGTCGCCGACTAGGGAAAGTGGACATCAAGGTCCTGGAGGAACGTGCCCTCGGGGAGTACACTGCAGCCATGGAGGCCCTCCTTATTGACCCCACCGGGATCagggagaggttagaggtcagaaatcaagaggaagagggggatgagaagaagaatgatgaggaagaggagggaggaggagatggggaaggCTCGTTCACAGAGTACCTGAATGAGCTGTGCAGTCAGAAGGAGTTTGTCACTAAGGTCGGAGCAGTGCTGGATTTGCAGtacctgtcttctctcctcacctcagACCCCGATACCATCGACCTCCTAGCACAGGAGGAGGCACAGgtGGATCAGGAGATGCCAGACGTGCCTGCCAGTGTTACTTGCAGTGACCCAGAGGACTACGCTACCCACACTGCATCTGAAGGCTGTACTGCACAACAACAGGCCCCGTCACTCACAGAACACAGAGAAGCTCTGAGCCCACCTATGACATCATATGAATTACAATTCGAGAGGCACTGCAGGTCTATGTCCACCAGTATTCATCGTAAGAGGCGTTCAACTTCAAACTACGATAACCACAATGTACCTGACCACGGGCCTCCATTGTTCATACAGACCCAGGACGGTTGTACTGTTAGTTACCTCATCCCTCCTACCCCTTCACCGTCTGGAACTTTCCAACTGGCAACCTCACAGAACGGCATGTTTCAGCTTCAAGGTCCCTGCCCTCCTCCTCAACCTGGGAACAACTACTCCCACAATGCACCATTCCCAAGGCCCACACCACACCTCCGAGCCTTCCCTCTGCCACCTCTACCTGTTAGTCACAAAAATGACAACTACCACAACGCACCACCACCGCAAGGGTTTTTCGTCCTACCGGAAAGCTATTCCCCACTCCCTACCCCTATGGCAGGCCAGGATGCATTTCAGATGTGTCCTCCACAACGTTCCAGGCACTTTGTGTTCAGTGAGGACAGCCCTGAGGGTGGACCCTTCATGTTTATTCCTATGGGAGATTACGTCCCCCACAATGCACCACTTCCGATGATGATGAACTCCCCCTCCCCATTTCCTTTCTCGGAACATCAAATCCTGAGTTATACTCCTAGTAACCAGACTTCccaacacacacagcatcatTATCCAAACAATACTATTGCTGTGACTGATGTCTACTATCCCCCAGGAGCTTTGCCTGTAGAAAATGAAAACAATCAGAATCTTTATATAACAACTGGGCCTAATACAGCCTATGAAGCTATATTGTCACATGGTCATAGCTCGTCAATAGAACTACCCGCCGCCATCTTGCCTGTTGTGGGCAGCAGTGGTCAATATAGAACAGGACATTCAGCCTCAAACTTTGTGGTTCAGGAATCAAAAGACCCGCTCTCAATCACTTCAGTCCTTGACCTCCAGGGCGGTCCTCTGCAAGGGGATCTTCTAGCCTCCGAGCCCACCACATCCTCAACCACGTCTGGGGTACTCAACAACCTGCACCGGATTAAGTCCGATCAACAGAACTACAACCAGTCAGGTCAACAAAACTACAACTCCCGGAACGAGGCAAACTTGTCAAACTTGTCTGTCCCCTTAAATACGAGTAAAGATGGGTTAACCTTCACGATCCTGCctctggaaagagaggaagatggagtgatggagggaatGAGTGAAGAAGATGAGGACTCGGGCGACTCCACCGCGGGGCAAGTGGGAGACGTGCTGAAACAGGAGGATCTGGAGGaaaagaaagaagaggagggatggagagaagaagaagagggaggaagagaaggagtagTACTATCACCCATCCAGACATatcctttcccctcccctcctcctgtctctagtCTAGGCCCGCCTACTCCGATTGCATCCCCCGGCCCTTTCCCTCTGGCGGCTTATCACGGGGGCAGGAGGATGTTGACGGAAAACCCACCATTCCGCCCCCCTAACCTGAGACTCCTAGCCATGGCAGCACTCATCCACTCTGTCTCTTCAACGCCCCCGGAAGGCCAAGGAGACGACAACAAGGACGAGGGTCAACTGAACTGGAAGCCCCAGGATCCTCGCCCCTTTCAGCTGTCTCACCCTGCCCGGGAGAGGGACAGGGTCACCCCCCCTTCAGGCCATGGGGATGGGGATACCCCCTGCACCGTACCCATCCAGTCCTTCATCATGGCTGTCTCCTGCTCCACCCCCAGAGGCGACCCCTTCCTGGATGCTCACCTGACAGGCTGGGTTAGGGACACCCCGAACCCGGCAGGTGAGGGAGATCCAGAGCCTCTACCTCTATGGgctactgcctctctctcagaCCCCACAGAGGAGCCTCAAATTGGGGAAGGGAGTCTGGAACACAGGCCTCAGCTGGAGGAAGGTCCTAGACTGGATGTGACTGGGAGAGGAATGGAGGTGGAGGCAGCTGACAAGGGAggtgaggaggaatggagggtgaTAGACACTTCGTCATTCGACGGGCCCAACACTGAAACATCTGATAGTTTCAATGCTAAAACGTTAGACTGTGTGAATAGTTCAGCTTCAGATGGCAACAAAGCTGAAGCTTCAGACATGCACATCAGTCCTCAAGCTTCAGACATGCGTATCAGTCCTCAAGCTTCAGACATGCGTATCAGTCCTCAAGCTTCAGACATGCGTATCAGTCCTCAAGCTTCAGACATGCGTATCAGTCCTCAAGCTTCAGACATGTGTATCAGTCCTCAAGCTTCAGACATGAGTATCAGTCCTCAAGCTTCAGACATGAGTATCAGTCCTCAAGCTTCAGACATGCGTGTCAGTTCTCAAGCTTCAGACATGCGTGTCAGTCCTCAAACTTCAGACATGCGTGTCAGTCCTCAAGCTTCAGACATGCGTGTCAGTTCTCAAGCTTCAGACATGCATATCAGTTCTCAAGCTTCAGGACTGGACCGTGCCAACGTTAAAGCATTAAATAGAATTGATCTTAAGGTGACAAATGTGTCTGAAACAAATCCTCCAGACAATGTCAACACTCAGGCAACTAACAGTGCAATTGTTCAAGCAACAGACACAACCATCACTGAAGCACCTTGCGTTACTAACTCTGGAAGTTCAGCCACTGTCAACGAAAAGCTAACAGACGTGATCACAGCCACCGAAGCCTCTGGTATCACTGAGTCATGTGGTTCAGCTGGTGGCAACAAACCGTCGCCAGACTCTCCTGCTATTGACTGTGTGAAAGAGTTCGCTGACCCCAGTACAGTTCCTATTATCACTCAGGTGGACTCAGACATAGAGAGCTCACCGCCATCCATAAGCAGCAGAGATCCTGGATCAACcctactgtcagactgtataaGTGAGACAGTGGAAGAAGCCTATCCTAGAATGGAGGAAACATGGAACCAGCCTATAGAAGGGGTGAACTTGGATGAGTCTATGTCCGATAGTCAGGCTTCCATACCTGGGCTGCTCCACCCTCACTCTGCCTGGGATGAGTCCACTCCACTCCCCCTGTGTCTGGAGGCTACAGGGGTCAACAACGACCAGCTCCAGTCATACATGCCCAGGGACAGCACGAGGGAGACGGCCAACATCTCTACCGCACACACCCTCCTCACCCTGGGGCAGGTTGAGGTGGAACACTCCCTCACCCCAGCGTCTCGTGGAAgtacagagggagagactgtTTTGGGTGGCACCGAGGGACAGAtgaagagtgatggagagagagaaaacggggtggagacaggagaggaggcgGAGATGGAGGTGAAAGAGATAAAGCAGcagaagagagagactgagtcgGAGGTAGAGACCACCCAAACCGGTCAACGGGCAGATGCAGATAGAGGGAAtacagaaaggagagaaagagaagaagacgaagagagaatgaaggagaggaACGAGATCGTTGGAAGACTTGAAGAGACGTCAAAGGCGAATCCAAGCAGAAACAGCAAGAGGTCAACTAGACatcagaaacagagagatagtAGACGGAGGAAGGACACCATGAAAACAGAAGAGGGGAAGAAAGAAATAGAAAATGAAAAGGAGGTAGTAAAGAAAACTGAGAAAATGGAAATGAGGGAAGTAGCAgttagagaagaagaagagggggaagTAATAGCAACCGAAAACAAgatggaagagaaaacagagaaaaagaAACAGAGACCGTCAAGGAAAGGACGAGAGAGACAAGCTGTGAATAGAGAACAGGctgaagagaaagaacagaggaGTCACAGGGCGGTGCAGACGGAGTTCAAGGCTGCTACTGCTCCTAATATTAACACTGATAAAGTGAAGGTGACACTGAAAGAGCCTCAACAGCGTCAAGGCCAGAAAacggaggcagacagagagacgttGAAACAACGAGACGAGGCAAAGGATAAGACACAAAAGCCAAGTACAGGACCTATGATAAGAGCAAGGAGGAGTAGCAAAGCTGCAGAGAAGGGGAAAGAGTCGTCAAAAActaagaaagagacagagaaagaggatgaGGCAAAAAGGACAGAAAAGCCCCGTTTTATCCCAAGTCCTATGATAACCACAAGAAGGAAGAGCAGAGCAGCAGAGAAGGAGAAGCCCAAACCAGGAAACACAATGAATAAAGTGCCATCTGTAGAGATGGATGAAGAAGAGGGCGAGGGAAAAGAGCAAAGATCTGAAAGGACCAGAACTCTAACTCCTGTGACAAGAAAGCAAAGAAAAGATGCAGAAGGGAAAAAAGAAGGGaagccaaacacaaagaaagagACAGGTGGCGAGACAGAGAAACAAagggatgaggtagaggagaggactgaaaacCCCTGTCCCATCACTAGTACTGCGACAAGCCGTATGATCACAACTAGAGGGAACTGGAGAGCTGAAGAGTGTAAGAAAGAACAGAATCCGCACACAGCTCAAAAAGAGGCATTGGCTACTACCCCTAATATCTACACTgataaagagagggaagagggagggagagaagagagggaggacgtACCAACCTCAGGGAAGATGACGTGGAGAGAGCTCAGTCCTATGACAAGAAGGAAATGGGGAAAGAACGACGTGGAGAGGAAAGACGAGAAGGAGCCGAGCACAGCACATatggagatagatggagagatggggaaaaaggagagagagacgattGAGAAGCCTAGTCTTAGACGTCCTGTGACTAGAGCAAGAAGGAAGGATgtagaggtaaagaaagaggataAACCAAAACcagcagagaaagagacaggaaaaCAAGGGAACGAGACAAAGGAGGAGAGGACTGAAAAGTCTTCTCCTATTCCAAGTCCCATGGCAAGAACGAGGCATGCTAAAGCCGTAATGGGCAGGAAGGAGCAGAAGGAAGAGTCCGCAAACACTGCAGAGGAGGAGACGGGGAAACAAGGGGACAAGGTGGAAGAGCATGTGACAGAAAATCTGAAAAGTAAAACTATCGAGGGGGAAGGGACTATCGAGAATGATGCATTCGTAACCAACAGGGGTCTAAACCGTAAAGGAATGAAAAGGAAGGTGGGAGAGAGTGGGGATATGGGAGGGAAGAAGGAAAGACAAGTAGTGGTTCAATCTGAAGAAGGGAGCCATTTAGTATTAAAAAAGCTTAAAACTAAAAACAGGAGAGGACTAACGGAGgaatccacctcctcctccaaagGAAAGATAGAGAAGGTAGAAACCGATGCTAAGATAACAGGAAACAGAGGGACAACAGAAAACAAAATAGAGCTAAAGACCATTCCAGCATCCAGAACCAAACACAGTGAAGGGAAAAGGGAGATAGAAACAGTTCTGTCCCCTGTAACTGAACGGAGGACAGGAAAAACAGAGGGAGGAAAAAGAAATGGAGAGACCATTCATCCTCCCTTCCCAGCCAAGCTCAGTAAAGTGGAGGAGGATGAACCAACACAGGCAGAGGGTCACACATCTgacgagaagagagagaaagtggaacCCAAGAGAAAGCCAGAGatggacagagcgagagagagatggagccagAGAGTGGGTAAAAGACAGAGactgagtgagaagagagagaaagtggaacccgagagaaagccagagatggacagagcgagagagagatggagccagAGAGTGGGTAAAAGACAGAGactgaAGAACGGCGTGTTAAATTGGCATTACTGTCGATACCGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880652 lncRNA downstream 7784 13111902 ~ 13112213 (-) True G772934
TU880641 lncRNA downstream 17699 13102029 ~ 13102298 (-) True G772924
TU880630 lncRNA downstream 35072 13079772 ~ 13084925 (-) True G772914
TU880562 lncRNA downstream 107983 12963423 ~ 13012014 (-) False G772863
TU880563 lncRNA downstream 107983 12963423 ~ 13012014 (-) True G772863
TU880667 lncRNA upstream 58455 13197504 ~ 13199073 (-) True G772946
TU880721 lncRNA upstream 87914 13226963 ~ 13227177 (-) True G772997
TU880725 lncRNA upstream 91997 13231046 ~ 13231269 (-) True G773001
TU880744 lncRNA upstream 113030 13252079 ~ 13252337 (-) True G773018
TU880757 lncRNA upstream 138173 13277222 ~ 13285284 (-) True G773028
XM_021617078.2 mRNA downstream 105538 13012712 ~ 13014459 (-) True LOC110532921
XM_021614711.2 mRNA downstream 136897 12966133 ~ 12983100 (-) True ripk3
XM_021614696.2 mRNA downstream 243551 12856566 ~ 12876446 (-) True LOC110531492
XM_036987371.1 mRNA downstream 251706 12856566 ~ 12868291 (-) False LOC110531492
trnaa-ugc-29 mRNA downstream 466208 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_021614714.2 mRNA upstream 72466 13211515 ~ 13217001 (-) True LOC110531504
XM_036989186.1 mRNA upstream 211071 13350120 ~ 13367152 (-) False LOC110531502
XM_036989187.1 mRNA upstream 211071 13350120 ~ 13367176 (-) True LOC110531502
XM_036989160.1 mRNA upstream 303405 13442454 ~ 13472851 (-) False sb:cb1081
XM_021614725.2 mRNA upstream 303405 13442454 ~ 13479364 (-) False sb:cb1081
TU880578 other downstream 123587 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 123587 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1148643 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1231282 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1331428 11785781 ~ 11788569 (-) True LOC110532912
TU880902 other upstream 451204 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 558130 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 841279 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 1110352 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1585005 14724054 ~ 14724522 (-) True G774427

Expression Profile