RNA id: XM_036989162.1


Basic Information

Item Value
RNA id XM_036989162.1
length 5274
RNA type mRNA
GC content 0.40
exon number 9
gene id sb:cb1081
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13442454 ~ 13483203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCATTGAGAGGTGAGTTCAACAAGGTGGACCGTTTGCAATTGTTAGCTAACAGAAGCTAACACATTCCATTTTGGTTTGTGTTAGCTGCAAATATTCACTAACATTAGCTTGCTAACagctattagctagctaacagccaaCAGGTAGTGTGCGGGAAACATAATAGCATAATGAAGTCTGTTCCGGGTCTAAACTTCCACTTCAAATAATCATATGGTGATGTAGACATTCTAATACATGTAGtaaaaatagcaaaaatattttTCTGTTTGAATATTGTTGCTAATCTGTCACAGTAATCCCttcaaaaatgtgctttttatgGCTTCACTGTAACACTGGAATGTTCATTTGAATCATTCATCTGAAATTGTTACTAGAGAGAATAATATGTTCACGGCAAATTAAATCCTTGTTGAACTCCCCTCGTGTCGTTGTCAGAGACATATATTTAGAAATGTTGACAAATCAccagccatgttagctccccattATTATGTGGGCAATGTTGACAAATAGCAGGTCATTGAATTGTCTACATTTCACCAATGCTATAACTGAACATCTAGGATTACAATTACAATCCAAACATTTGTCATGAATGGATAATTAGAATGCTCGGATGTGCTATCCATTCTAAAGTTGGCCAAACTCTCTAAATGTATGGCACTGATCAAGACTCTAAATTTGAAAAAACGACCAATTTGAGAAGGAAAAACATtgtgtataataaccataaaTCGGTAATCAATATGATTTGTGGTGAGGGACTTCAGATGTGCCAAACATATGAGAGGCTAGCTAGATAGCTGGGCTAGAAACATCTGGCTAGAAAAATGAATATTCAGTCaatgcaagctagctagctaactaggtgTCTTTTCTGAAAGAGTTAGCTTCAGACATtagggttgttaacagtgtccactCCTATTAAATCAATTGCAGCAAGTTACCTGATAATGTTGCCAATGTCCATAGTGAAATCCAAAATCCATAGTAAAATCCTGCACTGTAGCAAGCTGATCTGCTAACATCACTAGCTAGCAAAATATCCATCAATGTCAACTGAGCTTGCCGTGGTTTTGGACTAGCTCGCTAGCGATGATAACCCACTTTGCACactacatttttgttgttgttcaattTATCATTCATGCCATGTTACCTGGCTCGTCTCCAACAGGATATCCTTAAAAGAAATGcacttattttcattttttttttgttgttatcaAAATGAAAACAATGAGGCTACTAACATGTATTGTAATCTGGGCTGCCTATCAGAGGAACCACTCGACTGATGACGTCATTAAGATGGCGGCAGTTTTCTAAACGTTTTAACATAAATATGAGTTTTTCAGACGTTTTAAGGGTAGGAACATGCATATTGATCACATTTGGTTTTAAAAATCACCTTTACTTACTAAAATGTTTCCGTTCATCTTTTAAAATGTAATAATTGGAACTGCAGTGGTGTGGTGTTGTCCGTCAACGTGAGTAGAGGTTATCGTAAGGTCGTGAGTCACAACATTCCTGTGCTTGGGTTTTATAGACTAGGGTCTGCGTCCCAATAATATCTCCTTCTTCCTGAAGTGTACACTTGTTCACTTCTTCCCACATATCTAAAAACACTATTGGTGGAGAAATGGGGCAGTCATTTTCTTTAAATCAAAAAAAGGGAGGTAAACAAGTCCACACAGGAGGAGGGATAGATAATTGGGACGTAGCCTAGATAGAGGCATCTAACTGTTTGATTTTATCATGTAGGAACTTTAGATTTCCGGGGGAACTCAGGcagtgtggtataaagcaggcaGGAGGTATCCGAAGTGAATACAAGTAAGATAAGGTTTCCCTTATGGATCACTGCATTTTATCTGGCTGTTTTAAGTGTGGTTGGAAAGTGTTCTGTTTATGATCCTGTTTCAATATGACTGAGACTGACTTTATTGAGCCACAATATAATAGGTGCCCAAAGTCCAAAAACATCAGTCATCATGCTGTATCTTGCATCATATCAAATCATATCTCAACCACAACATATCTGTGGCAACAAACCATTTGGTAAATGCAGGTCAAAGGTCAGGTTTTCTCTGATTAGCCAATGAAACGGTCTCATTCTTGCCCACATGACAGGATGTTGCATCAAGCTGAATGAGAGATATGGCTTGGGAGAGGCTATACGGTAagctagctgggaagggctcatcaggaAGACTGACTAAATGAACTGACTTAACCGAATCCGTTCATCTCCACTTGACTCTCAATTTGCAACATACGTAATCAATTTGGGCGTCAGGCGTGTCCGTATAGCATCTTCTGTGTTGCTCGTCTTGAAAAACTCTGTTCTAACCATGTGATAAAAGATTGGTCATGTTCCAGGCTGACCACATTGCAGACGTTGCACTGCATTtaccaatggttgcgtgccacgtGATGGACTGTGAAGTTGGGCATCAGGCTGCTACATTATTTGATGGGGTTAGCTTAAATGTTAAACACCTATCCATGCATTGTGCGATCTGGCATGCGTCTGCAATGTAGTCAGCCTGGAAAACTATCACAACCACTACAACACGTTTTATTGTTATCATATCGCCCACTGGATGCCGTAGGCTTTATGCTGTTAGATTGGATTAGGATTCTTCTTTTACAGGACCAAAAGAAAATTctaattatttattttccaacgacagcaacaaataaataaataaaagacaaTGTATTAGCATATGTATTTAAATGAGTACATACCTATAGATGTGGCTTTTGTCCTGATTTAAATGACACTAATCTGAAGTGATGCCATTTTGTCATTGTGCTAAAATGaatataaatattatattatatattaaaatatatttgcTAACCTACTGAGagctgtatcatgttatcattTAACCCTAATTCCCTGGGCTCTTGTCAAAATTAGtgtactctatagggaatagggagccattttggaGGCAGAATATGGTTTCATCATCCACCTTTACTATCATCCACACCAGGGACACAGGTACAAGTAAGCCTACACTGATGTGAGTAAAGATGATCTTTGTCCTGCCACATTAACATCCAGTATGTGTCCTATTCCTCATATAGAgcatagagctctggtcataaGGAGTGCACTGCAGGAGCGCAACCTTCACTGGGGCGGGGGAGGACATGACCCGCGCACATTCTGAAATTTCTTTTTTGTCATCTCCCCCGGTTTTATCATTGCACTGAGATGCAAAACAAGGCTCTGGTGTGCGTTAAGACCATGCAGACACCTCAGAGCATTTGGGTAGGCTGTTTTCCAGTTTggctgtgtgaaggcaaagcttctCAAAGGCTGGCGTATAGGACCAGCAAGGAGAGCAGAAACTGGATACTGATCTACCTGGCAAGGGCCTGTGAGAAGTTGCACAACCTGTGCTAATGTGATGGAGTCTACCAACTGGGTTCAGGTTGAACCTGTGGTCTTCACTGAAGAAGCCCCAATGTTCAGCACGTCTCCCCCGGGGCGCTACGAGTGCAGAGTATCAGGGCTCCGATGGGTGTGTAAAACCTATGTCAGTCTGCAGTATCAATTCAGCTCCTGGGAACCTCACAGGGCAATGATGAAAAGCTTCGGGTACAAGCAAGGAGGCCCCCTATTGGACGTCACAATCATTGCAGGAGAACTGGAAGAAGTGCATCTGCCACATTTTGCCTGTTTCGGCAATGATCCCTCTTttaaagagaaagtgagagttcTACATGTAGAAGACTGTGGTGTGTCCGTAGAACAAGTGGAGGAAGTCACCCGCTTCCACATCAAGATCCTCCATCCAACCTTCTCTGCAAAAGGAGTTCTCGTGAGATCTGGCTTTCCGCTGAAAGTACACTGTGACTTGCTGCTCTACCAGGCCAAGGCAGCATTTCTCACGCTACATGCATATCTGGTCCCCTGGGATTCTTCTGTAGAACAGGCAATGAAGAAAAAGGAGCACTCTTATGGATACAGGAGTATCAGAAAACCGCAACCAGTGAAGTCCCTTCGGATGAAGGATTGGTTCAGCCTCACAACGTCGTCTCCCTCTGCTGAAGTTAAACCTCCTAAAATGAAGCTGAGATATGACAACACTACACCAAACTTCTTTGAAGTGTTCATAGAAGATGCAGATGTTGACTTCGGTATGAAGCTAATCAGTGACGTGGAGGGGGAAATCGTATGGGATCACACAATACAAAAAGCTGACTTCAGACACAAAACCACTCAGAGTTCACAAAACCTGCACTTTGTGGACCTCCACCGGACAGACCTTATCCAGAGAGTGTGCCAGGTGAAGCCCATATTGGATAAAATCCTGGCCAAGAGAGTTATCACTGACGAgggctacagtacagtaatggCCAAACGCACCACACAGGACCAGATGAGGGAGCTCTACATGGGACCTTTGAGGGCAAGTGGCATCAAAGCGAAAAATATTTTCTATGAGATCCTGAAGGAGTTGGAGCCACTGCTAATCAAAGACCTGAAGGGTGAATGAGGAGCTGGAATGGTGAATTGGGGACATTTAAAGTTTGTTTTAGGGGAAAAGGGCATAAATGACGGCAGCTCCGCTTTGTTTTATTACTTTGTGTTTACAATAAAACACAACCTAAGAGGAGTATAGCATCATTATTTTATCATTGTTATTTTTCAACATGTAAATATTGGTAGCCAGCAGAACAGCAACCAGCAACCTAGTGTTTTAGCCTTGAGGCTTTGTCAAAGACATAACATTTGATAACAGTTGTGTTGGAACTGAATTTCCTCTGAAAATAGAACATTTGCTCAACCGGTTCACCTAGATGCTCTGTGTTATTTACAGACAAGAAAATATATAAAGGAAATATATTATGAACatagaaaaatatataatataacgcAGATGCAAAATATACTGGAATTATTTCATTTTGGCTGTTTCATTTTGGCTGTTTAGTGAGGGTAAGGAATACCAGTGATGTAAATAAATATATGAAGATATAACTTTGTAAAGCTTAATGTACCAGCCCAATGAAACGTTTAACAGTAATGAATGATTTGTGGCGTAATTTTCACAACACGGGTATTAGAATATGTATTGAAATAAATAACTACCAACAGATGTGTATTTTGTACTGATGATTTTGTCATTGtgctaaaataaatataaattctagcccatgtggctcagttggtagagcgtggtgcTTGCAACGGCAAGCTTGTAGGTTCAATTCCTACAGGGGAACAGTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880857 lncRNA downstream 5342 13436307 ~ 13437114 (-) True G773125
TU880854 lncRNA downstream 9343 13432881 ~ 13433113 (-) True G773122
TU880853 lncRNA downstream 13584 13428577 ~ 13428872 (-) True G773121
TU880852 lncRNA downstream 15338 13426884 ~ 13427118 (-) True G773120
TU880846 lncRNA downstream 25480 13416576 ~ 13416976 (-) True G773114
TU880876 lncRNA upstream 12722 13492086 ~ 13492442 (-) True G773144
TU880879 lncRNA upstream 20275 13499639 ~ 13499842 (-) True G773147
TU880880 lncRNA upstream 20798 13500162 ~ 13500437 (-) True G773148
TU880881 lncRNA upstream 21957 13501321 ~ 13501657 (-) True G773149
TU880886 lncRNA upstream 27148 13506512 ~ 13506838 (-) True G773152
XM_036989187.1 mRNA downstream 75280 13350120 ~ 13367176 (-) True LOC110531502
XM_036989186.1 mRNA downstream 75304 13350120 ~ 13367152 (-) False LOC110531502
XM_021614714.2 mRNA downstream 225455 13211515 ~ 13217001 (-) True LOC110531504
XM_036989250.1 mRNA downstream 303407 13119997 ~ 13139049 (-) False LOC118966159
XM_021617078.2 mRNA downstream 427997 13012712 ~ 13014459 (-) True LOC110532921
XM_021614726.2 mRNA upstream 8675 13488039 ~ 13535479 (-) True LOC110531518
XM_021614735.2 mRNA upstream 145817 13625181 ~ 13643119 (-) True LOC110531522
XM_036989179.1 mRNA upstream 188562 13667926 ~ 13673035 (-) False LOC110531523
XM_036989171.1 mRNA upstream 188562 13667926 ~ 13676434 (-) False LOC110531523
XM_036989174.1 mRNA upstream 188562 13667926 ~ 13677335 (-) False LOC110531523
TU880578 other downstream 446046 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 446046 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1471102 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1553741 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1653887 11785781 ~ 11788569 (-) True LOC110532912
TU880902 other upstream 110889 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 217815 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 500964 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 770037 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1244690 14724054 ~ 14724522 (-) True G774427

Expression Profile