RNA id: XM_021614726.2


Basic Information

Item Value
RNA id XM_021614726.2
length 1208
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110531518
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13488039 ~ 13535479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATACCAGTAGGAAAAGGCGTTTCCATCCACGATCCGGCAAGACTGTGTACTTTATCCTACTTACAACCTGACGGACGGATCAAACTTGCCTGGACCAAAAAACAACGCATTTATCCACACTAGCCAATATAATTTCAACATAAGAATTGCTTTTGTAATCGCTTTTATATATTTAGGCTATACAATAAAATCCATTACAAGACAGCGGTCTACAACTAACAACATCCTAAACCAACTACATTCTGGATAGAGGAGCTGACTGAGGAAGAGTACTTTGCAGCAAGATTGTACGCGTGTACATCAAATATAAATCACATTTTAGTAAAGTTTTGTGATAGAAGTGAACACTTTCTCTTACGCACAGACACAGATCGTCTCTCTCGCTTCGCTGACTCATAGCCTACACAGAACCCAGGACCATGTCGGAGTACAGCTCTTTGCTCAGCGACCTGTCTGAAAACATCACCAATGAGGACTTGGACCAGCTGAAGTCTGCCTGCAAGGAGGACATCACAGAGGACCAGAGCAACACCATCACCTCCTCCAAGGAGTGGTTCAACTACCTGGAGGAGAACCAAAAGCTGGCACAGGATAACCTGTCGTACATTGAGCACATCTTTGAGATCTCACGGCGACCAGACCTGCTGACCCGTGTCATCGAGTACCGCACCACGGTTCTCAAGATCTCTGAGGACGATGAGATCGACACCAAGCTCACACGCATCCCCTCCGCCAAGAAATACAAAGATATCATTCGCCAACCCTCTGAAGATGAGATCATCAAGCTGGCTCCTCCACCTAAAAAAGTGTGAGGTCTACACCTCTGACCTTTGCACTTTGACCCCTGGCACTCCAACCATCTcgacccccctcctcctcccgccTCCCCCCAGTTCCACTAACACAAATCATTTTACACAGAGACGCTAGCAACACCTCTCCAATCAACCAATCAGATCGCCATGATGCTTCACCGCCCCTTTATCCAAGGCTAAGGAAGAGCTGAAGAtgaaagatggagagaatgaATCCCCCTTGTTAAGAGATGTGTTGGTCAGTTTAGAGCTTGTGTACGTTCCTATACTTGTAACACTGTTTTAAGAaaatgtgtaagtgtgtgtcgGAATGCATGtccgtgtgcgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtctgaatgcatgtccgtgtgtatgtgtgtgtctg

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880828 lncRNA downstream 4836 13476547 ~ 13483203 (-) True sb:cb1081
TU880857 lncRNA downstream 50925 13436307 ~ 13437114 (-) True G773125
TU880854 lncRNA downstream 54926 13432881 ~ 13433113 (-) True G773122
TU880853 lncRNA downstream 59167 13428577 ~ 13428872 (-) True G773121
TU880852 lncRNA downstream 60921 13426884 ~ 13427118 (-) True G773120
TU880927 lncRNA upstream 2959 13538438 ~ 13538655 (-) True G773187
TU880941 lncRNA upstream 22493 13557972 ~ 13558182 (-) True G773200
TU880903 lncRNA upstream 50847 13586326 ~ 13666937 (-) False G773163
TU880905 lncRNA upstream 65604 13601083 ~ 13603058 (-) True G773165
TU880904 lncRNA upstream 119502 13654981 ~ 13658885 (-) True G773164
XM_021614725.2 mRNA downstream 8675 13442454 ~ 13479364 (-) False sb:cb1081
XM_036989161.1 mRNA downstream 8675 13442455 ~ 13479364 (-) False sb:cb1081
XM_036989162.1 mRNA downstream 8675 13442456 ~ 13479364 (-) False sb:cb1081
XM_036989160.1 mRNA downstream 15188 13442454 ~ 13472851 (-) False sb:cb1081
XM_036989187.1 mRNA downstream 120863 13350120 ~ 13367176 (-) True LOC110531502
XM_021614735.2 mRNA upstream 89702 13625181 ~ 13643119 (-) True LOC110531522
XM_036989179.1 mRNA upstream 132447 13667926 ~ 13673035 (-) False LOC110531523
XM_036989171.1 mRNA upstream 132447 13667926 ~ 13676434 (-) False LOC110531523
XM_036989174.1 mRNA upstream 132447 13667926 ~ 13677335 (-) False LOC110531523
XM_021614738.2 mRNA upstream 132447 13667926 ~ 13713484 (-) False LOC110531523
TU880578 other downstream 491629 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 491629 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1516685 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1599324 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1699470 11785781 ~ 11788569 (-) True LOC110532912
TU880902 other upstream 54774 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 161700 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 444849 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 713922 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1188575 14724054 ~ 14724522 (-) True G774427

Expression Profile