RNA id: XM_036989174.1


Basic Information

Item Value
RNA id XM_036989174.1
length 2623
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC110531523
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13667926 ~ 13713529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGACTGCACTCACCTTCACTCTTCAGACTCCTCCAGAGGGAGCCTCTAAACCACATATTTGGAAGTTAAGTTATGCGAAAGCTCAACGTTGGAAGCTCCAGACACATTTATTGCTCACGGATATCCAAAGTCTATTGATGGTTAAACATTAATCTTTGCAATAAAATGTTCTACGGAGAAAAGGAAAGAGTTTAACTTATCTTCAACAGACTCTCCATTTTAAACTTGCTGTGGCCGTGTTCAGGTGCATCATGGGACCTTTGATCCGGCAAGTCTGTTTGTTAACATTCCTCATCTTCTTTAATGCCTGTTCATCTGTTGCAGATAAGCAGCTTGTTGTCCCTCCTGACCCTGTAGTTACCTCTGCTGGTCATGATGTCATCCTTCCTTGTCATCTCTCTCCTCAAACCAGTGCTGTTAACATGGATATCAGGTGGTTTAAGGAAGGAGAATTCGCTAGCCCCCTGTACCTGTATTTGGGTGGAAAGGTAACAGAGGGGAAAGGCTATGAGGGAAGAGTGAGTGTGTTCACTCAGGAGTTGGAGAAAGGcaatatatcactgctgctgaataatgtcatggcttctgAAAGGGGAATCTACAAATGCCATGCCAGCTACATGGACTGGATTCAGGAACTGCCTGTTGTGCTACAGGTTAAACagcagggcagtgtccccaGGATCTCCATGAGGAAGCACCACAGAGTGTTCATCCAGCTCAGCTGCAGCTCAGAGAACTGGTTCCCAGAGCCTAACATGTTGTGGACAGACAGCAGTGGGAAGGAGATCACctcagcagagacagagagacccaaACAGAAGGAGGGGGGCGTCCTGTACTCCATAACCAGTCACATGAGAATAGGGATGGACAAACTGGAAGGGATCACCTGTGTAGTGATGTCACAGAACCAGGAAACCAAGATGGAGTCTGCGCTGCAGATGACTGAGGAATTCTACATGAGCAGTCTGCCTGACAGGGTGTATATCTCTGCATTTATGATTCCTGTGTTTTTGGGACTGCTGTGTATCACTGCATCTGTGCTCTCCTTATTCCATCAGAGAAGAGTTGTTCGAGAAACACTGAAGCCTTTGGatGATATGAATGCAAAATTAAAAGCTATGGATCAAGAGCTCATCAAAAAGACAGAGGAACTCACTTATAAGGATAAGTTAATGGGAATTACTGAAACAATCCCAGACTCTGTTTGGAGCTTGATGGTTGATCATGCAGTGGATGTGACATTCGATCCTGACACTGCACATCTCAGACTATCTTTATCTGATGATAACAAATGTCTCAAATTTGTTGAATTAAAAGAAAAAAAGGATTGTGAGAATTTCAAAGATAAATGCAAAGGAAGCAGCAGCATGAAGTTTAAAGAAGAACACAAAGAAGAAGACACAGAGCGTTTTGGAGGAAAACCTACAGAAAATAGTATGTTAAATGTTTCAGGAAAAGACAAAGACAAGAAAACTGGATTATTTAACTGGATGATGAAAAAAGGACAAAACAACGAAGGTACTCTGAAGGTTGAGGAAGTACGCAAAGACGAGGCCACTGAGAATTTAGAAGAAAAATGCAAAGGAACTAAAAACAAGTTTAAATATAATCAATGTGTCTTGGGAATGGAAGGATATGACAAAGGTACACATTACTGGGAGGTTGACCTGGGGAAGAAGAGCCAGTGGAGTGTTGGGATCGCTCAggacacagagaagagagacaacaTCCAAATGTATCCAGATACTGGCTTCTGGAGCATATGTTACAAAGATGGAGAACTGAAAACAGTTGAACCGTCTTCCACTTTCCTTCCCATTGAACTGACACCTGAGAAGCTGGGAGTTTTCATGGACTATGAAGGGGGACAGATAACATTTTTCAACGTGGAGAAGAAATGCCACATACACTCCTTCTGTGGCAAGTTTACTAAGAAACTCTATCCATTATTTGGTCCTTTGATTGATTGTAAAGAGGAACTCAAAATCTCACCTGTGGTAAAAAGAGACAAACCCTCAACCTCCAAGAACTGTTAGTGTAAATAATGGAAGATGACAAAGTCAGTGAAAACAGAAAGGTATTTAGAACCCAAAGTATATTATAGACACTTAAATTTAAGATGAAAATGTAAATCCTAAAATGTTGTTTAGCATGAAAAGTTCAAGCCGGTGCGCCTGGTACcttctaccataccccgttcaaatacacctcaatcttttgtcttgcccattcaccatctgaatggaacacatacacaatccatgtcttaattgtcttaggttaaagaaggatttttaagcattgtcTCCCGCTTTCATCTAAACTGGTATGATgaggtgacatcaacaagggattatagcttcacctggattcacctggtcagtctatgtcatggaaagagcaggtgttcttaatgttttgtacactgtgttaaTCTATTTAAATGTAAAGTCACAGTTGTTTTAATTACAATACATATGACATTATAGAATAATTGACTCACTCACTGTAATTATGTGTAATATTCTGTTTAAAAGCTTTACACTCACATTTTTACAAAATCTGTAAAAATGTAAACAGTTTTGTGACAATAATAAAAGGCATTTTAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880903 lncRNA downstream 989 13586326 ~ 13666937 (-) False G773163
TU880904 lncRNA downstream 9041 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 64868 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 109744 13557972 ~ 13558182 (-) True G773200
TU880927 lncRNA downstream 129271 13538438 ~ 13538655 (-) True G773187
TU881061 lncRNA upstream 111633 13788968 ~ 13843395 (-) True G773313
TU881156 lncRNA upstream 230411 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 238204 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 240663 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 240663 13917998 ~ 13943722 (-) False LOC110531536
XM_021614735.2 mRNA downstream 24807 13625181 ~ 13643119 (-) True LOC110531522
XM_021614726.2 mRNA downstream 132447 13488039 ~ 13535479 (-) True LOC110531518
XM_021614725.2 mRNA downstream 188562 13442454 ~ 13479364 (-) False sb:cb1081
XM_036989172.1 mRNA upstream 27200 13704535 ~ 13713497 (-) False LOC110531523
XM_036989173.1 mRNA upstream 27200 13704535 ~ 13713519 (-) False LOC110531523
XM_036989176.1 mRNA upstream 27200 13704535 ~ 13713529 (-) False LOC110531523
XM_036989178.1 mRNA upstream 28201 13705536 ~ 13713493 (-) True LOC110531523
XM_021617133.2 mRNA upstream 60073 13737408 ~ 13739231 (-) True LOC110532994
TU880902 other downstream 75838 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 671516 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 671516 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1696572 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1779211 11871488 ~ 11888715 (-) True G771540
TU880908 other upstream 19844 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 302993 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 572066 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1046719 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1560723 15238058 ~ 15253973 (-) True G774562

Expression Profile