RNA id: XR_005053417.1


Basic Information

Item Value
RNA id XR_005053417.1
length 1418
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110531523
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13667926 ~ 13713529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcaaatatacaggatacaaaCATTCCACCTCAGCTAAACAATGCATATACAGCATTCtacaacacaaataaatacaaaaatattgtAGATATGGAAATAATAGATTTAGAGATGGTAATCTTGTCATCTGCTCAAAAGGTATTTTTATACCTTCTAATACATTCAACCATTTTTGTATTCACCACATCCTTGTTTTGGTCTGTAATACAttgcttcttcttctttggtgagGTTTAACggtggttggcatccaatatatgttgcattaccaccaccagCTAGACTATaatggatatacagtgcattcagaaagtactcagacctGTCACGTCAACTCCCACTCCCGCTCCACCTCTCCGGCGCACAACGttgccggtctactaaccaccggtcctgccAACACAtctttacacacacctggcaaccatcaGTGCATCATGGGACCTTTGATCCGGCAAGTCTGTTTGTTAACATTCCTCATCTTCTTTAATGCCTGTTCATCTGTTGCAGATAAGCAGCTTGTTGTCCCTCCTGACCCTGTAGTTACCTCTGCTGGTCATGATGTCATCCTTCCTTGTCATCTCTCTCCTCAAACCAGTGCTGTTAACATGGATATCAGGTGGTTTAAGGAAGGAGAATTCGCTAGCCCCCTGTACCTGTATTTGGGTGGAAAGGTAACAGAGGGGAAAGGCTATGAGGGAAGAGTGAGTGTGTTCACTCAGGAGTTGGAGAAAGGcaatatatcactgctgctgaataatgtcatggcttctgAAAGGGGAATCTACAAATGCCATGCCAGCTACATGGACTGGATTCAGGAACTGCCTGTTGTGCTACAGGTTAAACagcagggcagtgtccccaGGATCTCCATGAGGAAGCACCACAGAGTGTTCATCCAGCTCAGCTGCAGCTCAGAGAACTGGTTCCCAGAGCCTAACATGTTGTGGACAGACAGCAGTGGGAAGGAGATCACctcagcagagacagagagacccaaACAGAAGGAGGGGGGCGTCCTGTACTCCATAACCAGTCACATGAGAATAGGGATGGACAAACTGGAAGGGATCACCTGTGTAGTGATGTCACAGAACCAGGAAACCAAGATGGAGTCTGCGCTGCAGATGACTGttgcccatccctgctgtaGACCAATGCCCTTAACAAGTGGTCCAGGGTCCAGGGTTTGTTCATCATGGTGATAATGTGTAAAGTTACCAACTCAAGAGGAATTCTACATGAGCAGTCTGCCTGACAGGGTGTATATCTCTGCATTTATGATTCCTGTGTTTTTGGGACTGCTGTGTATCACTGCATCTGTGCTCTCCTTATTCCATCAGAGAAGAGTTGTTCGAGAAACACTGAAGCCTTTGGatGATATGAATGCAAAATTAAAAGCTATGGATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880903 lncRNA downstream 4873 13586326 ~ 13666937 (-) False G773163
TU880904 lncRNA downstream 12925 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 68752 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 113628 13557972 ~ 13558182 (-) True G773200
TU880927 lncRNA downstream 133155 13538438 ~ 13538655 (-) True G773187
TU881061 lncRNA upstream 112491 13788968 ~ 13843395 (-) True G773313
TU881156 lncRNA upstream 231269 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 239062 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 241521 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 241521 13917998 ~ 13943722 (-) False LOC110531536
XM_021614735.2 mRNA downstream 28691 13625181 ~ 13643119 (-) True LOC110531522
XM_021614726.2 mRNA downstream 136331 13488039 ~ 13535479 (-) True LOC110531518
XM_021614725.2 mRNA downstream 192446 13442454 ~ 13479364 (-) False sb:cb1081
XM_036989172.1 mRNA upstream 28058 13704535 ~ 13713497 (-) False LOC110531523
XM_036989173.1 mRNA upstream 28058 13704535 ~ 13713519 (-) False LOC110531523
XM_036989176.1 mRNA upstream 28058 13704535 ~ 13713529 (-) False LOC110531523
XM_036989178.1 mRNA upstream 29059 13705536 ~ 13713493 (-) True LOC110531523
XM_021617133.2 mRNA upstream 60931 13737408 ~ 13739231 (-) True LOC110532994
TU880902 other downstream 79722 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 675400 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 675400 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1700456 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1783095 11871488 ~ 11888715 (-) True G771540
TU880908 other upstream 20702 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 303851 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 572924 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1047577 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1561581 15238058 ~ 15253973 (-) True G774562

Expression Profile