RNA id: XM_036989176.1


Basic Information

Item Value
RNA id XM_036989176.1
length 2672
RNA type mRNA
GC content 0.40
exon number 11
gene id LOC110531523
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13667926 ~ 13713529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTGATTGATCAAGGATATCCAAAGTCCATTGATGGTTAAACATTAATCATTGTAATAAAATGCTCAACGGAGAAAAGGAAAGAGTTTAACTTATCTTCAACAGACTCTCCATTTTAAACATGCTGTAGCAGCGTTCAGGTGCATCATGGGACCTTTGATTCAGCAAGTCTGTTTGTTAACATTACTCATCTTCTTTAATGCCTGTTCATCTGTTGCAGATAAGCAGCTTGTTGTCCCTCCTGACCCTGTAGTTACCTCTGCTGGTCATGATGTCATCCTTCCTTGTCATCTCTCTCCTCAAACCAGTGCTGTTAACATGGATATCAGGTGGTTTAAGGAAGGAGAATTCGCTAGCCCCCTGTACCTGTATTTGGGTGGAAAGGTAACAGAGGGGAAAGGCTATGAGGGAAGAGTGAGTGTGTTCACTCAGGAGTTGGAGAAAGGcaatatatcactgctgctgaataatgtcatggcttctgAAAGGGGAATCTACAAATGCCATGCCAGCTACATGGACTGGATTCAGGAACTGCCTGTTGTGCTACAGGTTAAACagcagggcagtgtccccaGGATCTCCATGAGGAAGCACCACAGAGTGTTCATCCAGCTCAGCTGTAGCTCAGAGAACTGGTACCCAGAGCCTAACATGTTGTGGACAGACAGCAGTGGGAAGGAGATCACctcagcagagacagagagacccaaACAGAAGGAGGGGGGCGTCCTGTACTCTATAACCAGTCACATGAGAATAGGGATGGACCAACTGGAGGGGGTCACATGTGTGGTGATTTCACAGTACCAGGGAACCAAGATGGAGTCTAAACTGCAGATGACTGAGGAATTCTACATGAGCAGTCTGCCTGACAGGGTGTATATCTCTGCATTTATGATTCCTGTGTTTCTGGGACTGCTGTGTATTACTGCATCTGTGCTCTCCTTAATCCATCAGAGAAGAGTTGTTCGAGAAAAACTGAAGCCTTTGGATGATATGAATACAAAATTAAAAGCTATGGATCAAGAGCTCATCAAAAAGACAGAGGAACTCACTTATAAGGATAAGTTAATGGGAATTACTGAAACAATCCCAGACTCTGTTTGGAGCTTGATGGTTGATCATGCAGTGGATGTGACTTTCGATCCTGACACTGCACATCTCAGACTATCTTTATTTGATGATAACACATCTCTCAGATTTGGAGAATTAAACGAAAAAAAGGATTGTGAGAATTTCAAAGATAAATGCAAAGGAAGCAGCAGCATGAAGTTTAAAGAAGAACACAAAGAAGAAGACACAGAGCGTTTTGGAGGAAAACCTACAGAAAATAGTATGTTAAATGTTTCAGGAAAAGACAAAGACAAGAAAACTGGATTATTTAACAGGATGATGAAAAAAGGACAAAACAACGAAGGTACTCTGAAGGTTGAGGAAGTACGCAAAGACGAGGCCACTGAGAATTTAGAAGAAAAATGCAAAGGAACTAAAATTAGGTTTAATCAAAATACGTGTGTCTTGGGAATGGAAGGATATGACAAAGGTACACATTACTGGGAGGTTGACCTGGGGAAGAAGAGCCAGTGGAGTGTTGGGATCGCTCAGGAAACTGATAAGAGAGACAACATCCAAATGTATCCAGATACTGGCTTCTGGAGCATATGTTACAAAGATGGAGAACTGAAAACAGTTGAACCGTCTTCCACTTTCCTTCCCATTGAACTGACACCTGAGAAGCTGGGAGTTTTCATGGACTATGAAGGGGGACAGATAACATTTTTCAACGTGGAGAAGAAATGCCACATACACTCCTTCTGTGGCAAGTTTACTAAGAAACTCTATCCATTCTTTGGTCCTTTGATTGATTGTAAAGAGGAACTCAAAATCTCACCTGTGGTACAAAGAGACAAACCCTCAACCTCCAGGAACTGTTAGTGTAATTAAAGGAAGATGACAAAGTCATTGAAAAACAAAGTATTTAGAACTCAAAGCTTATTATAGATGCTTAATTTAAAGCTGAAAATGTAAATCCTATAATGTAGCTTTTACATATGTTAGCTTTAAAGTGTAGAATATACACTCGGTGTacaaatattaagaacaccttccaaaTTTTGccgtcagaacagcctcatttcattctacaaggtgtctagATGCTTCCcactggatgtcttttgggtggtggaccattcttgatacacacaggaaactgttgagcatgaaaaacgcAGCAGCGCTGCAAAttcttgactcaaaccggtgcacttggcacctaccaccattccccattcaaaggcacttaaatattttgtctttcccattcaccctcgaacaacacacatacacaatcaattgtctcaaggcttaaaaatccttctttaacctgtctcctccccttcatctacactgactgaagtggatttaacaagtgacatcaataagggatcgggAAAGAGCAGTTGATAATGTTTTGTGCTCTCAGTGTTAATCTATTTAAATATAAAATCTTAGTTGTTTGTTAGTACTGTATGACAATATCGAATAATTGACTCACTCACTGTAATTATGTGTTAAAAAAAAGCTTTTCACTCACTGCACTCAATGTGATAAAATCTGTAAAAATGTAAACTTTTGTTGCAATAATAAAAGGCATTTTAAAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880903 lncRNA downstream 37598 13586326 ~ 13666937 (-) False G773163
TU880904 lncRNA downstream 45650 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 101477 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 146353 13557972 ~ 13558182 (-) True G773200
TU880927 lncRNA downstream 165880 13538438 ~ 13538655 (-) True G773187
TU881061 lncRNA upstream 75439 13788968 ~ 13843395 (-) True G773313
TU881156 lncRNA upstream 194217 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 202010 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 204469 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 204469 13917998 ~ 13943722 (-) False LOC110531536
XM_036989174.1 mRNA downstream 27200 13667926 ~ 13677335 (-) False LOC110531523
XM_036989177.1 mRNA downstream 28058 13669260 ~ 13676477 (-) False LOC110531523
XR_005053417.1 mRNA downstream 28058 13671810 ~ 13676477 (-) False LOC110531523
XM_036989171.1 mRNA downstream 28101 13667926 ~ 13676434 (-) False LOC110531523
XM_036989179.1 mRNA downstream 31500 13667926 ~ 13673035 (-) False LOC110531523
XM_021617133.2 mRNA upstream 23879 13737408 ~ 13739231 (-) True LOC110532994
XM_036989190.1 mRNA upstream 33098 13746627 ~ 13754247 (-) False LOC110531529
XM_021614748.2 mRNA upstream 33098 13746627 ~ 13755370 (-) False LOC110531529
XM_036989192.1 mRNA upstream 36799 13750328 ~ 13755370 (-) True LOC110531529
XM_036989253.1 mRNA upstream 52339 13765868 ~ 13778605 (-) True LOC110532926
TU880908 other downstream 5207 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 112447 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 708125 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 708125 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1733181 11970904 ~ 11971354 (-) True G771614
TU881137 other upstream 266799 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 535872 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1010525 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1524529 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1638778 15352307 ~ 15361319 (-) True G774702

Expression Profile