RNA id: XM_036989190.1


Basic Information

Item Value
RNA id XM_036989190.1
length 3245
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110531529
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13746627 ~ 13755370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgcaaccttccagttactagtccaacgctctaaacactaggctaccctgagcCCATGCAAGGGCTCACCATCCattatatcaacatgttttgaggATACATAGTGTTTGTTTCCAAACATtgaagtaaaacaagcttatattttgggttccgATGGAGTactacagttgaactaagctcatgaggtatTTAAAaagatgtagcaactgcagactgTATGTTTAATGAACGAGGAATACTGAATCTGATATCTCTAACATCCCATATCAGACATGGCCTTCTCATCTGCAGTCTCCATCTCCATCAACACCCCTGTCCTGATTGAGCAGCACCTCAACTGCTCCATCTGTCTGGGCCTGTTTAAGGACCCGGTCACCACCCCCTGTGGCCACACCTTCTGCCAGACTTGCCTGGAATGCAACCTCCACTTCAATGACCTCATATGCCCCATCTGTAAGGAGCATCTGAGGAGGAACCCACAGGTGAATATCATCCTCAGTACTCTTATTCAGGAGTTGAAAAAGGCCCAGGAGAGGAAGCCAGGGGAGTATTCTGGAGCTCCAGGTGAGGTGGCCTGTGACGTctgcactgagaggaagctcaagGCCCAAAAgtcctgtctggtgtgtctggccTCATATTGCGAGACTCACCTGGGCCCCCACACCTCAGCAGGCAGGCTGAAGGGCCACAGGCTGGTGGCCCCTGTGAAGGACCTGGATGGGAGGGCGTGTCTGACCCACGGTCGTCCCCTGGAGCTGTATAGCAGGGCAGAGGGGCACTGTGTCTGTGCCCTCTGTGTGGAGGAGGGTCACGAGGTCATCTCCGTGGAAATGGAGTGGGACAGGAAGAAGGGTAACCTGGAGAGCACCAAGGCTGATATTCAGGAGAGAatcctggagagggagagaaaggtggAGGAGATCAGGGTGTCTGTGGAGCAGTGCAAGGCCCacgtggacagagagaggagggagattgaCTCTGTGTTCAAAGCAGTGATAGCAACTGTAGAGGAGACCCATCTAGATGCTCTCAGGCCCATGGAGGAGAGGCagcaggaggtggagagagaggcaggagaactCACCCAGGAGCtgaagagagagatcagagaacTGAAAGAAACCATTGGTCAATTGGAGGATGTTGCTGACCTCAAGGATCACATTCACTTCCTGCAGACTTTCCCATCCCTGTCGGGGCTGGGTGATGGCAGAGACTGGACTGAGGCCTCCATTGATACTACACTCTCCTTTGGCACCATGAGAAGCAGCTGGTCGACCATGATGGAGAGAATCAAGCACGAGCTGGAGAAGCTCTCCTCAGTTGaacttgagaggatcctGAAGTTTGCAGTTGATGTGACATTGGACCCGGACACAGCAAACACACAGCTGATTCTATCTGAGGACGGGAAAgaagtgagagatggagggaagataCAGGACATCCCTGACTGTCCGCATCGCTTCGATCACTTCGGCAGCGTCCTAGGACACAACAAGCTAACCTCTGGGAGATCATACTGGGAGGTGGATGTCGGGAACAAGACGGGTTGGGATCTGGGAATAGCAAGAGGAGATGCCAACAGGAAGGGGAAGCTCTCTGTGAATCCTACTAACGGTTACTGGGTTATAGTGAATTATAATGGTGCCAAATACGGAGCCTTGGGGGACCCACCTTTTCTGTTGTCACTGAGAGAAAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGGTTGGTGTCTTTTTATGATGTGGAGGCTAAGGCTCACATACATTCTTTCACTGGGTATTCCTTTATTGGGGAAATATATCCATATCTCAGCCCACATCTTCTGAATGGGGAGGAGAACTCAGACCCACTGGTCATCACCAAAACAGGGTGATGTCACGCATTGCTCAGCCTTATAGGTAAAATACATTCACTTCAGGTTAGGATTAGGGCTACAGCTAGAGTTTGGGTTGGGTCGGGTTAGGGTTGTGGCGGTCACAAAATTGTCAGCcgatgattgtcaagcaaataactgtcggtgtCAAGGTagttgaccgttaattaacaaacacatttagcatctcctggcttccacacatacaAGCCACTGGTGCAGACCTTTGGAACGTTAACATTTGAAAAAGTCTAAtaagtccatgtaatatagcctacaaattcacaacaaatccattatttattttagacaggtctaaagaagcatgattttaggaaaatgtagtctatttcagaagaacagaatagcatactttGATATGTCCTTAttttaggtcctgatctggctatgccaaatggctgtgggctacactagttcatttaaaaggcatgagctctgcttagttttttggtgcaggctgtacacactacatcagtcactcATTCACAATTTACAAGCACTTGATGATGCCTAGAATTTTAGTGGCCGTAATGCATCCTAAAAAATGTCATGTCTTTTGCAGCCAGTTGCCATTGTGCCCTTCTTCCTGAGTGCTGTTCGCTCTGaatcacctctcactcacatggctctccatcacttgatcaagtctttctcacaggctacaagtgaagggGGACACAACTGcgcgcgtccttatccaattccgaggttcATATTTAAgttattggaagaactgtccacatttacttttcgtcagccaacatgATGAGTAGGCCTaccgaacagcaaaagcactagcctatgtcaatctactatcccccatagtgcAAAAGTCAACCTATTTTGTTCTATGcgataaataaatattccaaaacaacaGTCTGGgccagttgtgggatgtgatagatcccaaattaatacaaccactagcatcaaaaaaactTTTTTATGCAATATGACTGACCCAACAGATCAGAacttttagcttaaaatgttaggctattaggctatttcttcacataagcgcagcaatgcgcacatggtagtaggctataaTTAGCGGAAAACACTTATCAAAAGTGACTGCAAATACAATTATGCTTGTAATGCTGTTATTACAAAGGTGCATTTTTCTGGTGAAAATTATCTTACCCAAACTTTAAACTCACACGCTGCTTATGTATGTCTGTTAGGTTTTACACCCtgtgtaaagcggattaatgtgcttagttttaagaagttatttggcaactttagactacatgaggtgtgcaactatgattagaaaaagtCGCATAAAAAGtcattgtttcttatgctgggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880903 lncRNA downstream 79690 13586326 ~ 13666937 (-) False G773163
TU880904 lncRNA downstream 87742 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 143569 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 188445 13557972 ~ 13558182 (-) True G773200
TU880927 lncRNA downstream 207972 13538438 ~ 13538655 (-) True G773187
TU881061 lncRNA upstream 34721 13788968 ~ 13843395 (-) True G773313
TU881156 lncRNA upstream 153499 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 161292 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 163751 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 163751 13917998 ~ 13943722 (-) False LOC110531536
XM_021617133.2 mRNA downstream 7396 13737408 ~ 13739231 (-) True LOC110532994
XM_036989176.1 mRNA downstream 33098 13704535 ~ 13713529 (-) False LOC110531523
XM_036989173.1 mRNA downstream 33108 13704535 ~ 13713519 (-) False LOC110531523
XM_036989172.1 mRNA downstream 33130 13704535 ~ 13713497 (-) False LOC110531523
XM_036989178.1 mRNA downstream 33134 13705536 ~ 13713493 (-) True LOC110531523
XM_036989253.1 mRNA upstream 11621 13765868 ~ 13778605 (-) True LOC110532926
XM_036989254.1 mRNA upstream 26727 13780974 ~ 13788602 (-) True LOC118966161
XM_036989182.1 mRNA upstream 37363 13791610 ~ 13801901 (-) True LOC110531527
XM_021614747.2 mRNA upstream 47654 13801901 ~ 13810848 (-) False LOC110531528
XM_036989184.1 mRNA upstream 48608 13802855 ~ 13806762 (-) True LOC110531528
TU880908 other downstream 47299 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 154539 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 750217 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 750217 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1775273 11970904 ~ 11971354 (-) True G771614
TU881137 other upstream 226081 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 495154 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 969807 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1483811 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1598060 15352307 ~ 15361319 (-) True G774702

Expression Profile