RNA id: XM_021614749.2


Basic Information

Item Value
RNA id XM_021614749.2
length 2121
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110531530
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13823424 ~ 13831521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAGGATAGACGACACATTCACAGATATGGCTTCCTCCCTGAATGAAAGCCAATTCCAGTGCTCCATCTGTCTAGAGTTGTTCACTGACCCAGTTACCACTCCATGTGGCCACAACTTCTGTAAGAATTGTATCGGAGGGTATTGGGATATCAGTGACCTGTGCCAGTGTCCTTTGTGTAAGGAGACATTTTACAGAAGGCCTGAGCTTCGAATCAACACGTCGTTCAGAGAAGTTGTTGATCATTTTAGGAATATGAGAGATAATGAAGGGTGCATTGCTGCAACTGGAGAAGTGGCCTGTGACATCTGCTCTGGGAGGAAGCTCAAGGCCCTGAAGTCCTGCCTGGTGTGCCTGACCTCTTACTGTGAGATTCACCTGGAGCCTCATCAGAGAGTGGTGAATCTGAAGAGACACAAGCTGATTGACCCTGTGGAGAACCTGGAGGACAGGATGTGCAAGAAGCATGATAGGCTGCTGGAGCTGTTCTGTAGGAGCGACCAGACATGTGTGTGTCAGTTTTGTGCTGAGACAGACCACAAACATCACCACACTGTGCCACTACAAACAGAATCGCAACTAAAGATGGCTCTTATTCGGAGGTCAAAGGCGGATGTGCAGCAGATGATCCAAGACCGGCAGCTGAAGGTGGAGGAGATCAACGCTTCAGTGAAGTTAAGTAGAGACAATGCAGAGAGTGAAATAGCGGACAGTGTTGAAGTCTTCACTGCACTGATGCGATCTATTGAGTCAAACCAGGCTGAACTCATAGAGGTGATTGAGGAGAAGCAGAAATCAGCAGAAAGGCAGGCAGAAGGGCTCATCAATGACCTGGAGCAGGAAatcactgagctacagaggagaagtactgagctggagcagctctcacacacCGAGGACCATCTCGACCTTCTACAGAGTTTTTACAAGCAAACTACCCTTCCAAAATCTAAAAGCTGGACTAATGTTGCTGTTTATCAAGTCAACTTCTTGGGCTGTGTTCGAAATACAGTGCTTCAAGTGAAAGACTCCACCGAAGACCAAATAAGAAAGCTGTCAGCTATCGAACTGAAAGAGATGCAGAAATATGCAGTGGACGTGACGATGGACCCCAACACTGCAGGCCCATGGCTTATCCTCTCTAATGATGGAAAACAAGTGAGAAAATCGCCAAGGAAATTGAAGGTCCCAGATAATCCTGAGAGATTCACTGAGGATGTCTGTATCCTGGCCAAACAAGGGTACAACTATGGGAAACATTATTGGGAAGTTGGGTTACAGGAGAAATCAAACTGGGTTATAGGAGTAGCTTGCGAGACAGTGCCTAGGAAGGAATTAATTTCATCTGAGCCTGAGAAAGGGTTATGGACTCTGTGTCACAGGGATGGCAAGGAATATCTGGCGTGCACAAAAATTCCACGCCTTATTTTACCTTTTCCCCGACCCCAGAAAGTCGGTGTCTTCCTGGATTATAAGGAAGGCCAAGTGTCATTCTTTGATGTTGATGCAAAGTCTCACCTATTCACTTTCACAGGGTGCAAATTCTCAGAGAAAATCTTTCCCATATTTGATCCTTGTCGTACTGCAGAAATAAATGAAGACCTTCCTCTTATGATTACTATAGTGCAGGTAAATTAGTGACAGAACACTCCATGCATAGTGTAGCTCCAGctacaatgtactgtatatgcttCAACCGTAGATAAATTAGATGGGCACAGTCAAATGTTCCCATCTTTCCTTTCACTCTCATTTGGAATAGAGGCATCTACGCAATGGGGGACATGGGACGTGGACTCATTTCAACTATAGTTTACTTTGGGGGTCTGAAACTTTTATATTTATTGTAATACATTTTGCAAATATCTTGATTATATTTACCTTCCTTATTGTGACAAAATTAAATGTAATCCTAATTATTCTAATATCCATTTTTGAAATGTACGGTTTATCAAATGGAAATACTgtatttcaaatcaaactttatttgccacatgcaccgaatacaaaaGATGTAGACTTCAccatgaaatgctgacttacaagcccttaaccaacagtgcagttcaagaagaacaaaatatttaccaagtaggctaaaataaaaagtaacacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880903 lncRNA downstream 156487 13586326 ~ 13666937 (-) False G773163
TU880904 lncRNA downstream 164539 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 220366 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 265242 13557972 ~ 13558182 (-) True G773200
TU880927 lncRNA downstream 284769 13538438 ~ 13538655 (-) True G773187
TU881156 lncRNA upstream 76225 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 84018 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 86477 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 86477 13917998 ~ 13943722 (-) False LOC110531536
TU881135 lncRNA upstream 86477 13917998 ~ 13943722 (-) False LOC110531536
XM_021614747.2 mRNA downstream 12576 13801901 ~ 13810848 (-) False LOC110531528
XM_036989184.1 mRNA downstream 16662 13802855 ~ 13806762 (-) True LOC110531528
XM_036989182.1 mRNA downstream 21523 13791610 ~ 13801901 (-) True LOC110531527
XM_036989254.1 mRNA downstream 34822 13780974 ~ 13788602 (-) True LOC118966161
XM_036989253.1 mRNA downstream 44819 13765868 ~ 13778605 (-) True LOC110532926
XM_036989189.1 mRNA upstream 33199 13864720 ~ 13880077 (-) False LOC110531533
XM_036989188.1 mRNA upstream 33199 13864720 ~ 13880101 (-) True LOC110531533
XR_002474715.2 mRNA upstream 91323 13922844 ~ 13943754 (-) False LOC110531536
XM_021614753.2 mRNA upstream 114790 13946311 ~ 13969993 (-) False LOC110531537
XM_036989164.1 mRNA upstream 114790 13946311 ~ 13969993 (-) True LOC110531537
TU880908 other downstream 124096 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 231336 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 827014 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 827014 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1852070 11970904 ~ 11971354 (-) True G771614
TU881137 other upstream 148807 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 417880 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 892533 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1406537 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1520786 15352307 ~ 15361319 (-) True G774702

Expression Profile