RNA id: XM_036989189.1


Basic Information

Item Value
RNA id XM_036989189.1
length 2302
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110531533
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13864720 ~ 13880101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTATCCGGAAGCAAAGTGAAAGCAGATAAGAGACAACACATTCAAAGGACACCATACTGTATTCTAGCTAAATCCAAAGATGGGGAATACACAGAGTGTCCTTAAGAAGAAAGGATACACTATCCTGAGGAAGGTAGAGAATGGTGTCATTGGTACTGACAAAAATGGGGACCAGTTTGTCATTAAAGAGATCAAACTGAATGAGAACTCAGTCATGAACTCCAGTGCTGGAGACATAATCGATGAGGTTGAAACTCTCCTGCAGATAAATCACCCCCATATTTCAAGCCATAAGAACTCTTTCCAAGATGATGAAAGTTACTATGTAGTGATGGACCATTGTGACGGTGGAAATCTTGCACAGAAGATCAAAGAGGGGAACCCATTTTCAGAAGAACAGATCATGGACTGGTTTGTCAAGATCTGCATGGCTCTGAAGCATGTGCATGAACTGGGCCTTCTTCACAGAGACCTGAGACCACAGAATATATTCCTCACAACATTTGGGACACTTTGTTTGGGAGATTTCGGAAGAGTCAATGAAAATGCTTCCCAATCTGAATCTTCAAAAGATGGAATGCTGGGTTATTTAGGCCCAGAGATTCTGACTGGTGGAATTTATGACACTAAAAGTGATATTTGGTCCTTGGGATGTGTGCTGTATGAGTTGTGTGTGCTTCAGAGTGCATTCACTGCAGCAAGCACAATAGAGCTCATTCCCAAAATACTGGGGGGTCCTTACCCATCTCTCCCAGAGTGTTTCTCACCTGAGCTCCATCAAGTACTGTGTGACATCTTCCAACAAGAACCGACCAGTAGACCTTCAGCTGGTGAAATCCTGGCAAAACCCTTCATTATTAGTTTCCTCACAAAAAAGAATGAAAAAACTGTGGAGGAGCTCCAGACAAACTTGAACACTCTGAGAACTCTGGCAGACGGCTTGGAGTGTGTGCACCAGGGCACCACCATAGGCAGTCTGACTGGAGGTGTTATTGGGGCAGCTGGAGGAATCACTTCCATAGTAGGCCTCATCCTGGCTCCCTTCACTTTGGGCGCCTCCCTGATCGTCACAGGAGTGGGTGTTGGGGTGGCTGTCTTTGGTGGAGCCACAGCCGGAGTATCCAACATCACCAACATGGTCAATCAGTCTACCGACCGCAAAGCCATCAAGAACATCATCAAGGAGTTCCAGGAGAAGATGAACTCTGTGGTGACATCTCTACAAAACATCGCTGAGGGTTTGGAGACACCGCGGATGAGTGGCTCCTTTACCACAGAAAGAGACATTTTAAATGCAGAGAAGCTAGCAAATGCTGGGGCGAGGGTTGGGAGGGGCCTAGGGAGCATCCCAGAGCTTGTCCGATTGGTCCATGTGGCCTCCATTGGCAAGGTGGCAGCTCAAACTGCAAGGGCAGTGCGTGTTCTAGAGATGGCAACAGGAATATTCTCTGCTTTCTTTGTAGCAGTTGATATCTTCTTCATCGCCATGGATGCAAAAGAGATCCACAACATACGACAGGCGAAGGCTGAGAAACAGTCTAGTGAAAGCAGTAAGTTACACTTGATGGACACAGACTCCATGACTAAGCTGAACCCTGAATGTGAAGAACCAAAGGCTGAGGTCAAGTCAGAGACCATGAAGTTCATCCAGACGAtcagacagacagctgatcaGCTACAGCAGTGCCTGGACGAGCTGAGTGATGTCATCTCATTCATTCCTAAGATAGAGGGCTGTCACTTAGACAATTGAAACTATACTCAGTCGTAGTGATTGTAAAAGAATCAGAAACAAGAAATAGAGCAGATTGAATCAGTCCTTGATACACAATTTCACTGTAAAACACCCTGTAAAACACAGGTGTGGGCGGTGGTACTTTGACACCCAGATAGGCCTTTCGGTTTAAATTCTGAGCAAAATCCCTTTTCTGTTCTTCAATTCTTGCAAAAATCAGCTCTGATAGTAAGTAGGTTGTAGAAACATaagtatacagtatatctcagcTTTAGTACTGAAGCACTTTCCTTTCAGGTTATTACAGTTGACATGATTTGAtctgtacattttttttctcGCGTAAAACGATATCAGGTGTATTACACAACTACAAAAGTGTCAGTTGTTTCAATCTAATAATAGCCTACATGAAGTGGTGATGGTGATTGTATAAAAGTGTAATTGTTGCAATGAAAGATTTAGTCATTTTTAGGAAATTATCCTGGGTAACAACATATATATAATACAATCATAATCTATAAATGTCTGCTTCAAAAAATAAAAAGCATGTTTTAAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU881061 lncRNA downstream 21325 13788968 ~ 13843395 (-) True G773313
TU880903 lncRNA downstream 197783 13586326 ~ 13666937 (-) False G773163
TU880904 lncRNA downstream 205835 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 261662 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 306538 13557972 ~ 13558182 (-) True G773200
TU881156 lncRNA upstream 27669 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 35462 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 37921 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 37921 13917998 ~ 13943722 (-) False LOC110531536
TU881135 lncRNA upstream 37921 13917998 ~ 13943722 (-) False LOC110531536
XM_021614749.2 mRNA downstream 33199 13823424 ~ 13831521 (-) True LOC110531530
XM_021614747.2 mRNA downstream 53872 13801901 ~ 13810848 (-) False LOC110531528
XM_036989184.1 mRNA downstream 57958 13802855 ~ 13806762 (-) True LOC110531528
XM_036989182.1 mRNA downstream 62819 13791610 ~ 13801901 (-) True LOC110531527
XM_036989254.1 mRNA downstream 76118 13780974 ~ 13788602 (-) True LOC118966161
XR_002474715.2 mRNA upstream 42767 13922844 ~ 13943754 (-) False LOC110531536
XM_021614753.2 mRNA upstream 66234 13946311 ~ 13969993 (-) False LOC110531537
XM_036989164.1 mRNA upstream 66234 13946311 ~ 13969993 (-) True LOC110531537
XM_036989255.1 mRNA upstream 97382 13977459 ~ 13986939 (-) False LOC110531538
XR_005053429.1 mRNA upstream 109705 13989782 ~ 14002060 (-) False LOC110531539
TU880908 other downstream 165392 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 272632 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 868310 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 868310 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1893366 11970904 ~ 11971354 (-) True G771614
TU881137 other upstream 100251 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 369324 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 843977 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1357981 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1472230 15352307 ~ 15361319 (-) True G774702

Expression Profile