RNA id: TU881136


Basic Information

Item Value
RNA id TU881136
length 5403
lncRNA type sense_over
GC content 0.42
exon number 5
gene id LOC110531536
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13917998 ~ 13943754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACCGAAGATTCTGACGTTGTCTGTTGCACAAAACCGCACTGCTTGCTCTGACTGCACTGTCCATGCTGCTGTATCCTAGACTGTCTGCTTGAGACGGAGTCCGTTTACTCCACTCTACACCCGACTCTTCTGTCTTTGGCGCATCCTTTTAGTTTCTCTTTAAAACCTTTGATCGACTGAAGTGTTTTTCCAAGGAAAGAGACAGTTGAAACTGCCAGTATAACCGGTTATAAAAACGTGAAGAAGTCACTTGTTTGAATAACTCTCTCCCCACTGCACGTACTCAACATGAGCGAGCTCAGATCCACTGGGAACCCCAACAGCAGCCAGGCGCCTGCGTCAGACAACAAAGAGAAGGCGGTTGACTCCAAGGCCCCAGCGactggggaggaggaagaggaagtggaCATCGACTTGGAAGCGCCAGAGACGGAGAAAGCAGCGCTCGCCATCCAGAACCAGTTCAGACGCTTCAAGAAGAACAAGAAGTAGTGACAgaaggagaagaaagaaagaaaaaaaagaagaaaaaaaaagacaaaaaactTTCTGCAGAACAGATAAATAAATAGTGATGGAGGAGGACGGGTGGTGTGAGGGTGGAGACGTTGAGGAAGAGGGGAGATGAAGTTAGGAATTGTGTCATCGCAAATTATAAAACCAACCAATATCTTcactgtgagagagggagaggggaggagaggacaagaaaggagagggaaggagaggagaagagaccagaggggaagggaggataagagaggagagggaaggagaggagaggggaagagaggagaagagaggagagggaaggagaggagaagaaaggagaggagaagagataatATGTTAAAACATAATTTATAATCTGGCATGACCAATGACCCCAGTCACCACCACCTTTGCAGATATCCTGATGAATCCCCCTGCATCCTCCCTCCCAAACGCACCCCGTCCCCCCACTCCCACTGCACAGCCGCACATCCCCATGCCCCCCAACCCCCAAGAGAGAGGAAAACTGTTCCCTTGAAAACAGAGAACCAAGTCCTCTGACCGAACAAACACAACTGGCTGCCacacacaacatgtaaaaaaaacacatactATATTTCCAGCTCTCTTTCATTCATTtaacatctttctctctctctctgtgtgtgtgcgtgtgtgtgcgcgcatgtgtgtgtgtgtgtgtttttgtggtaCCCTCAATAAGAAAGGCAGAGTTACTAGCTCATGTTTTAGACAGCTGTAATTAGTTAGTTTTAAAgggctctgtatctctcttcctttcttttcCATTCTTTTTCCGATGCAGGCCAGACATCCGATCGCTGGACTCAGTGGCTCTGACCTCATGAGAGGACGCGCTGAGATGATGGACAGACGGACAGGGAACTCAGTTGTACTTACGTAACCATTAGAAACTCCACAGAGTACATACAGAGTACATAGGAGCCTTTTTCCATCCAACATCCAGTTACTGACGCTTTCATTGGCTCATCAAAAACAATATCAATATCAGTCAAGAGATGGTCAGATAACCCTCCAGGAAAGAGAGTATAAAGTTAACCCGCTGATAGATAACGATCCGGTGTGTTCGGAATACCTGAGCCAGTCTGTCCCTTTAGGGACATATTTTTGGAAAGGTCTTGGTCAACTGGTTGTAGCTGAATGTTGTATTCTTGTGGGTCAGCCTAGCAGTGGTGTAGAGTTCCTTCTGCTGTAACCTGAGACCCTCAGGCCCTTAAATAAACACTTGATAACATCTCTGGACCAGGTGCCAGCACCGACATATGACCTGATCTAAAAACCCTCAttttacacagagacagacagactggcagagggggtgtgagagatggaaagagaaagaaagagagagagagggagagagagagagagataatgaggtGAGAGGATAGAGAAAGGAATGAGGAGCGAGAGGTAAAAGAGTTGCATACTAACACCtccacaacacagtcacacagcacCCATATATAAAAATAGCAATTATACGCCCAATCCGGAGCACACAATCGCAAAAAAACGACAAAATGTCAACTGCACTTGACAGTGAAAAAGtctgcacaaacaaacacacacacatgcacacgcacacacatatttcCTACGCACAGAACTAATCATTCTGCCTGTTTGGACAATGATTAAACCCACTCCCACTTTCCATCCCCTCCCCTCGTATGTAGCACACAGGACTGCTCCTGAAAGCCCAGACCTCTGTACTCCTTACGCTTTAATCTCCCTACTGATTCATAGTATTATTATTGGAATGTAACCTCTTTTCTATTTCAAGGACAGAGCAGATTAAGACAAAACGAGCACAAGCAATATCATTCCGcccaccccccctcctctctactccctcctaaGCCTTTTCTCATTTACCCTTATCTTGGACTATTTCTTACATATGGATTTTTTACTTAAGACTTTTTCTAAGAGCCCCTTGTCAGTCGGAGCTCACTCAGAACAGGAATGCATATCTGGGATCAGCttggccttttagatcataatgaacctGATCTGTATGGACATGGAGAGGACCTGATCTGAGATCAGCACTCCaactctgagacgcttgataaCTACGGGCCCAGAGCTAGTTAGTTAGTTCTATTGAATCAGAGATGGCCCCATTTAAAACCTGGGTCATCTTAGTTCTTTCTTAACCGGACCCTTTTCCACTTCTTCCCCTAAAGGCAACCAAATATTGTAGGATTATCAAGAACATAGTGCTACTGTGACTAAATGGATGATGTGATGAAAGCCTTTCTTGGTGATTGTGTTTCTGAATGGAATTAATGATGGATTCTAGATAGGGTATATAGAGTGGGTCTGAGGTGTCTTCAAGACGTGCTCCGGAACTTTGGCGACTactaagtgttttttttttattttttacctcccgctttgggctggatgtgtcaatgtgtagtttatacatgcataatctatgagcagaattactgttttacctcaattagccacaaagTCCCTAGTTTGAAAGTGACTGTTTGTCTGGGAAGCTGTGGTGCGCCATTTTCTCTACATTTTCCCCCAAGTGGGCCAGCCCTCTAGCAATTCACATTCTAGCCAACGAACTTCAGCCCCtcaccatttgagtgacagctagcaagatgcacacacagcagaacgagagaaagagcaatgacgtggtgcacatatctgcacatatgtgaCATACTAcaccattttaggggaccacTTTTGACTCGTGAGCGCTACTTTCAGAAAGACTgactaaaaagtatacaaaagtaccggagaatctctttaagTAAACAATTCTGCTCTCCTCCAAAACCCTAGTGACCTAATTCTTGACAAGAGCTATAGACCCTTATAGCAAAATAGCACATCCCGTAAACAATGTGTGTCCCAATATCCATACTagaacacaggaggctgctgagtggagttcggctcataataatggctggaaccgCGCAAATGGAATtgcaaacacatggaaaccatgtggaaaccatgtggaaaccatgtgtttgatgtatttgataccattccactaattccgctccagtcGTTCCCCAATTAAggggccaccaacctcctgtgaacaTAGTTTTAAGTATGCTTGGCCAATATATTACTGCACAGCACAAGTAGTGTCCTGTTTAGGGGGTGTACTTGCACATtaagctgcctcatgctacagaaacaggagatatgCTCCTGCCCTATGGGCTGTTCAGGCTTGGACATAGCTTACTTACGATATACTAAGGAGGTAGCAGTAGAAGTATGCTAGTAACATGGATTTTTGGATATACACAAAAATACAACTTGGATTTAACATTAGACCCATACATACTTATCTCACCGAAGACTGTTCATCCAACCCCTGTAAGTCACATGTTCTAGTTGCCTATATGTCCTTACTGTCGGTGTACTCTGTAGTGACTTAAAGCAATAGTAGACTAACCCAGTTTAGTAAGGAGACCATCCTAAAGTGAAACCTCACCAATCATTCCAAGGAATCTGCGTATCTGCTGACTTCCCGTTCCCTAGACAGTGCATTTCAGTACATAgtgtactatttagggaatagtaTGTTTGAAGTAGTCCAATCTCTAGGGAATAGTATGGTAAAATAAAATGGTGCACTATCAAGGGAATAGTATGGTCagaagaagtgcactatgtagggaatagggtgtcatttcagattTACTCCCCCAAGCAAACTCTCTCTTTGTGGTTAGGATCAATCAAAACATTATATTGTctatatttaattatttaattaatATATTATTGAAGTGTTATTTATTGATGATGTTTAAGTTCTGTCTGTTGGTTTATTTATGTTtataactacctacctacctatggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctatggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctatggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctatggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctatggTACCTATACCCTTCTGTTTGGTTTATTTATGTTTATAACTACCTACCTACGGTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctacggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctacggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctacggTACCTATACCCTTCTGTTTGGTTTATTTATGTTTATAACTACCTACCTACGGTACCTATACCCTTCTGTTTGGTTTATTTATGTTTATAACTACCTACCTACGGTACCTATACCCTTCTGTTTGGTTTATTTATGTTTATAactacctacctacttacctacGGTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctacggTACCTATACCCTTCTGTTTGGTTTATTTATGTTtataactacctacctacctacggTACCTATACCCTTCTGTTTGGTTTATTTGGAGTATTTCAACTTGAGGTCGCATGTGATGAGATAcattttctgttgttgttttgttgctTATATTCCCCATTCTGTGTTTTGGCGTTTCAAACTACCAGGGGTGTGGGAGGTatagtatatacacatatattataAAGAGATGGTGTTTTCAGTGAGAATGCACATGAAACATCCCTGTTCTGTACACCCTTGTACTGTGTTTTTCTGCACTAATAAAATTTGCTGCAAATTGCCTAAGAGCTCAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU881165 lncRNA downstream 1962 13915539 ~ 13916036 (-) True G773395
TU881156 lncRNA downstream 10046 13907746 ~ 13907952 (-) True G773390
TU881061 lncRNA downstream 74603 13788968 ~ 13843395 (-) True G773313
TU880904 lncRNA downstream 259113 13654981 ~ 13658885 (-) True G773164
TU880905 lncRNA downstream 314940 13601083 ~ 13603058 (-) True G773165
TU881139 lncRNA upstream 45176 13988898 ~ 14002018 (-) True LOC110531539
TU882057 lncRNA upstream 78972 14022694 ~ 14025846 (-) True LOC110531549
TU882086 lncRNA upstream 130633 14074355 ~ 14074597 (-) True G774158
TU882087 lncRNA upstream 132243 14075965 ~ 14102816 (-) True G774159
TU882109 lncRNA upstream 170563 14114285 ~ 14123191 (-) True G774181
XM_036989188.1 mRNA downstream 37897 13864720 ~ 13880101 (-) True LOC110531533
XM_036989189.1 mRNA downstream 37921 13864720 ~ 13880077 (-) False LOC110531533
XM_021614749.2 mRNA downstream 86477 13823424 ~ 13831521 (-) True LOC110531530
XM_021614747.2 mRNA downstream 107150 13801901 ~ 13810848 (-) False LOC110531528
XM_021614753.2 mRNA upstream 2589 13946311 ~ 13969993 (-) False LOC110531537
XM_036989164.1 mRNA upstream 2589 13946311 ~ 13969993 (-) True LOC110531537
XM_036989255.1 mRNA upstream 33737 13977459 ~ 13986939 (-) False LOC110531538
XR_005053429.1 mRNA upstream 46060 13989782 ~ 14002060 (-) False LOC110531539
XR_002474721.2 mRNA upstream 78928 14022650 ~ 14025325 (-) False LOC110531549
TU880908 other downstream 218670 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 325910 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 921588 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 921588 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1946644 11970904 ~ 11971354 (-) True G771614
TU881137 other upstream 36606 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 305679 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 780332 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1294336 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1408585 15352307 ~ 15361319 (-) True G774702

Expression Profile