RNA id: XM_021614753.2


Basic Information

Item Value
RNA id XM_021614753.2
length 9139
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110531537
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13946311 ~ 13969993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctatcttattctctcactcactcactcactactgCACAATAAATGGATCTTTGGAAAAaatgcgagagagagggagaaagggaggagaagagggtgagcTAAGGGAGGGGGGAAACGGCGTATGCTTGTATACAGCAACCCTGATTTCCATTTTTTCCCCCAACTCGTAATGTATTTAATTCAAGTGAAACGTAATCATGACGTGTCGTGTCATTAATCCGCCCGCCGCCTTTCCCagcACTAAAGGAGGCCCCctctgccaagaaactgaagcaTGGCATAGCATCACACATACTACTGagaATGGATTCTCCTCCTGAGTGTGTGTTGGCTCTGTCCTGTGAGCCGCCCCAGTCACCCCCTACACTACCATCTCTGGACCACAGTCCCTTGGCCTCCCTTCACTCTTGCTCCCAACTCTCCCCTTTACACAGCCTCCTGGACCTGCCTGTCCCCCTCAGTCCCACAGCCCTGTCCCACACCCCGTCCTCCGACACCCCAGACACCACCCCCTACTCCCcgctctcccccttccccctcaaTCACCACAAtgaagaagaggatgaagagaggcTGTCAGTCCCTCTGTCCCCCACCCCAGCCATTGCTCTCTTCCCAGGGGGTTTTCGGGAGGTGTGTAGCCCCTCTCTGGAGAGCTCTGCTCCGGCCACTCCGACATCGTCAGCCCCTCTCTCAGGGTTCGGGGCCCTGGAACTGGCTCTGTCCTCCGGGCAGCCGGGTGCCACCTGTAGTGATGAGCTGGACCTCCAGCTCTTCCATAAGGATGGGGGGTGTCTGTCAGGATCAATTCCTggggtggtgggtgtttctgggGGTGTGGCCGGGCTCAAGTTCCCCTGCTTGGTGTGTGGGAAGAAGTTCCGCTTTCAGAGTATCCTGTCGCTCCACGCCCGCGCTCACAGTCTAGACAGGGACCGCCGCGCCTCAGCTCTGTACCGGACCGGTACCGGGTCCGGTAGCATCATTGGGACGGGGTCCAAGACACAGCTCAAGACCCACCAGAACGACAAGGATATCGGGCAGAACCACTACATCCACCGCCAGAGCCCCGCGCTGTCTAGATCTCTCACCCAGGGCCATAGAGGGGAGGACAGGGAAGGGGAAGCCCTAGAGGAGGCTCTCCAGATGGATCACCAGATCCTCCAGCAGTTCCTGATGGACGACAGCACACAGCTGACCCCTCTGCTGACCGAGGaggtgcccctctctctctccctcacctctccctacTCCTCCTGCGGCCTGGGTGGTGTGGGTCCCACCATCTTGGAAAAAGCTACCGCCGTCACAGCGGCAGCGCCCGCGTTCCGCTGCCATGCCTGCAAAGGTAAATTCCGCACCGCCTCGGAGCTGTCTCGCCACGTCCGGATCCTCCACAACCCATACAAGTGCACCCTGTGTCCCTTCTCTGCCAGCCAGGAGGAGCGCCTGGCCGCACACCTCCAGGACTGCcacccctccctgtcctccctgtctctctccccacctgtGGACCTCCCCACCCTGCCCCCCTACACCCCCAGACACATCCCTATTGtaaccaccactaccatcatcgcCACCCCCATTCCAGACGCACCCCTGCCCACCCCCACTATCACCCCAATCACAGCCCCGGCCCCAGGGGTATCCCCTCTGCCTGCCTTCTGCTGTGAGACATGCGGCCAGCGCTTTACCCAGTCCTGGTTCCTGAAGGGCCACATGAGGAAGCACAAGGACTCTCTGGACCACAAGTGTCAGGTGTGCGGCCGTGGCTTCAAGGAGCCCTGGTTCCTCAAGAACCACATGAAGGTGCACCTCAACAAGTTGGGCCTGAAGGCCGGTCTGGTGGGGCAGGTGGCCCCTGGCGCCGGGGCTGAACAAGGAGGGCCCAAAGGCTCAGTCACCAACCAGGGCCTCAACGCTCTCTACTCCAGCCTTCTGCTGGCTcgtggtgggggtggaggtggtggtggaggggggagagtcGGACGAGGAAGGGGCGACAGGGACGGCGCCGGAGTCTCTAGTAAATCTGCCATCTTAGGCTACCTGGGGTTGCCTAGCGACGGCGGCGCCAGCTGCATGGAACGACtccaggcagtggctcaggttgCGGAGATGGGGAACGGTAacgggggaggaggaagaggaggaggaggaagagagacaacaAATGGAGGAGACCAGATAGCCATGTGGCAGTTTGTAGCTCGTAGCCTGGTAGCAGCTCAACaggcccagcagcagcagcagcaccgaGCCACATCCAGGAGCACCGTGGTGGGAGAATCTGAGCAGGTCAGGGCCTACCTTGGAGGTCTGGATCCCCGGGAGGAGCCATCGTCTTCCGGAGCCCCATGGGAGTGCCCCGACTGTGGGAAGCTGTTCCGGAGCCTGCAGCAGGTGGTGGCGCACGCCCGCGTCCACGTCCAGCGGCCCCAGAAGAGCCACGGTCACCCTCCGCGCCACaccgggggaggagaggaggatggaggggggagcCGGGTTGCagaaggacgaggaggagggagaggaagtagTACTGAAAAAAGACAGGAGTCCAAACTTCAAAGTGGATCTCAGCATCAGCATCAACAAGCAGTAGTCGGAGGGTTCCACTCAGTGATGTCACAGTTCCAAGGGGAGAGACCGTATAAATGTCCCCACTGTGACTACGCTGGCACCCAGTCAGGCTCTCTAAAGTACCACCTCCAGAGGCACCACAGAGAACAGAGGAACACCATGGGAGCCTCTTCATCCACCGCCTCCTCACCAGGCCTCACCACCGCCTCCCTGGGCAGAGGAGGAGCTccacagggggaggggagggaggggatggccaaGCAGCGCCGGACCCAGAGCCTCAACCACAGCTCGGCCACCAGAGGCCCGGCGGAGACGCCTTCCTCCAGGCACAATCAGCACCAGCCCTGGATACTGGGCCTCCCcgagcagagagacagggaacacGCGAAGGCCATGGAGGGACTGAGAGAGGCAGATCTGGAGAGCCAGTACCGGTATCTGTCCGGGGTGATGGGGGCTTTGTaccagggagggatggagggagggtggacggGGGAGTCACCAacctccacccccaccccaaccccaccAAAGGCACCCAAAGTGTCTCGCCGCAAACCGCTCACCACCAGCCGTATGGTGCCAGCTAATGGGAGGGAGCGGAAGGGAGGGGGGTCAGCTCCTCGGGGTTCCCAGGAGGGAGGGTTGTTGTCCCAGCCCCTGGACCTCTCCCGCCGCCCCTCCCCTGGGCTCGGAGGTCTGGAAGAGGATGGAGTaccaggaggaggtggaggagcaggGGATACCCTCAACCAGTGCCTGTTCTGTCCCTTCCGCACCTCCTCGGCCGAGCTCATGGCCATGCACCTCCAGGTCAACCACACCAGCAAGTCCAGGCGTAAGAGGAGGGCCCCCATCCCCACCGCCCTGGGTGACCACGGGCCTCAGAGGCCTCCCCAACCCCGGGCCGACTCCAACCCCCTGGCCCTGTGGAGGTATCTGAGCGAGGCCGAAGACCGGGCCCCCCTGGAGGAGTGGGCCTCATccaggatggagagggagagggggacggAGAACGGCCTCACACCAGAGGAAGGGGACCTCGAGGGTCGCTACGACCACCACCACCCCGAGGCTTCTAACCGGGCCTCCACCACAATCAGGAACACACAGAGTGGCCTCGCCGGTAGTAGGAAGttggatgaggaagaggaggaagaagaggaagaggaggaagaagaagaagaggatttGGAAGGGGAGAGCATTAGTCCTGGGGATTCTCCTAGAGAGCATGGGATGAGCATGTCTCTCACCATGTCACCTACCCTCGGCTCTGACCGTCTAaccagaggggaggaaggagtgaTGGGggactaaacaacaacaacaatgtcaTCCTGCAGAGTGAAGGGGAAAAGCGGTTCAACTATACAGGAAGGAAGTTGTTTGGGGGTCATAGGTTGGATGTCAAGTTCATATCACCTCTTTTATATAGTTCAAGGTCATTGTCAAGGTCACGACCCCTGACCCTTGACTTTCAAGGGCCACGGACTGAGAACCATGTCCATGGAGAGGGTCATGTAAACAACAGCTCACACACCTCCTTAGGAATCCCTTTTAAACATCCTCCATTTTTATCTCTCTTCTTTTAATATTTACATCCCAGGAGTTCAGTGCAGTCCTCTCCATTTTCCcaaccaaccaaaacaccccTTTTACAAACACACAGTACAGTGTAGGACTTTTGAGGCCTTCTCTTCTATATTTCAACGTTTCCTGTTTTCCATTCCATCTCCTACCAAGAGGGCTAATTGTGATGATTTGAATGAGATTGTCCTCTTGCTGCTGTGAGTCTTAATATTAGTATGTGAGCAAAAAGAAACTGTGACCTCCTACTATTCCAGAGAACACAAAAAGGATTTTATCAGACCTTATACTTCATGTTTTGAGAATAATAATACTTATAAGAGTAACGTTGTTGATTAGTTATACAACCCACCGCTGTGAATGGAGGAAATCTTTAGCAGAACAAGTGTCAAAATAAGCCAAACTTCATCACAACTGCCGTTTAAATAAGATACCACTTCTTGACACTTTCAAGGTCATATTATGGTCTGTTCAAGAGCACCGATTCGGAAACGCGGTTCAACCCGGAACCATTCAAGCTGTCAACTCAAGCTAAGCTATCCAGctgtctgcaacaacaacaacaaacacaacaGGAGCAACTTTTTAACAGACAACTATTGACATGACAATGATCAAGGACAAGATGATCCTGGACCCTGTTATCACTGCCTCTCATTGGCCGGATGGCTGTTCCAAGGTCACCACGGGAACAGAGGAGCAGTTTGTCATTTCCTGTTTTCCCCTCAGTTTAGTGCCTGTCTATGTATGGTATGTCGTCAAGGGAGATCTACAGTATAGACCAGTGTTTCTGGGCTGTTATAGAACAATGAtatctgagtatacagtataaagCTAAAGTatatatgtttaaaaaaatggtTCTAGGGTATTGTGAATAGAAAGCTGTAGTGGTATACAAAGTGGTGTGGATCTGTCTCTCGTTACAAGAGACCGATAGCATCTCCCTGTGGCTTCTGTGAAAAGAAAAAGATAAAGCACTTAGTTGATGATGATGAAACAATAGATATACATATGAATCAAAAGAGATCAAGGTGAAAGGTCAAGAAGTGAAAATGTAGgtgaaaggtcagaggtcagtgtTTACAGCAGAAATGCCAGCATGTTCAGAGTCGGACGTGGGATAGCGGTTATTTCTTACGTTGTCATGGTGACCAACTGACAACTGAACAAACAGAAGACTGTTTTGGGGGACACGGGACCGACAGACAGACTGTGCATCCCGAACACAATCAGCTGACACGTCTGGTCAGGTGACCAAGGCTCCACGACCGTGTCACACTCTTTCATTTCATTCCTTTtaccagaaaaagaaaaaaaaacaaggggGAGGAAaatggaggagagaaaagagtaAGTTCCCTCACAGACCAGGGGACCGAAGCTGAGAAAGGAAACTGTTGTACTCTTGGGGTACGCCGTCTTTTAGATGACTAGATTCATTTCTTTttaagagaagaagaagaagaacagtaGAAAAGAGTAAGcattaaaaaaaactaacaaatcCATAGATACATTCCGGTAGAATGTGTGTGTAGCTTTTGTAAAGACAAGAAAAAAATCcctttgtttattttcatttcaagAAGAGAAGCTTACAGAGAAGGTTATGAATATaggtaataataataaatataaggCTTGTTGTTGTGAGGAAAACACTAGTTGGAATGTCTGTCtatcagggttagggtcaattccatttcaattccagtcaattcagaaagtcaACCCGATTCCAATTCCAAATTTTCCccattgaagagaattggaatttcagtgtacttcctgaattgactggaatttaaatggaattgaccccaaccctgctgtcTATAAAGAGCACTGTGCAAGGTTTATCATTTCCAAAAGTAGTCATTTTATTTTGACTTTATCGATAGACCAAACCTATATCTTATGAAAATGTAATGAGTCACATTCTGTTGGAGTAAACAGCTGCCGTTTCCATCCCCTCGCccgataaatcaatcaatcaatcaatcaatcaataatccAATCAAAACTTTGTCATGTTATTATTAAGTGCTTGTATGAGATTCAAGTTGACATCACAAAATATAATTTGATATCAAAATATGAACCTATACCTAGTATCACATACCATAGCCATGGTATTGTCTTAGAGCATCATACCACACACAGTTCTGCACACTGTGAAcatgcaaatgtaaaaaatatcaaAAATCCCTACTCATGATTGTAAACATCACTAAACTATTTGATTGGATAAGTCCTGCCTTCTCGCCCTCTTTGCCCATTGGTTGACGGCGAGAGCCTGGGATCGGAACCGCAGCCTTACTTTTGGTTTACGTGTTTTACTTCTATCCTCATTAGAGCGCCTTATATGAGTTTAGAAGTTCCCTAAGTGGTGTTTCCTTAAAGACAGGCTACATCCATAactgcactctattccctatatagtccgttacttttgaccaggaccattgAGCCCCGGTCAAAACTAGTGCTATGAACCCTGATcgaaagtagtgtactatttagggaatagagtgcccGTTTGGATGTAGACTGTAGTGTCAAAGCCACCGTGCCTTCTGTGTCAAGCACTTCCTGGATTTGGTATTTTGTAAGCTCACCAAAAGCACTTAGCCcacatctgtctctctttctctctctctctctctctctctctctctctatctctctctctcatccctctctctctctcatcctctttctctctcatcctctttgtGACCTTCCAATTTTGTTCTGTCCACTCCCTCCCCCCTTTCAATCCCTTTATCCTTTcatgtctgtgtgcatgtctctctctcttttcttcctctcttccgtaacctgttactctctctctcttctctacctcccttccgtaccctctctctctcttctttctctcttctgtaacctgtcactctctctctctgtggcaccATTAGAAGGTGATGATGTGTACTATCTGGTATTGAGGCCTTTTATTCTTAGATTTGTATTGTCAGTTTGTGTGATGTTCGTACGTTTGTTTGACATTTGATGCCTGATGAGATGGAGTAACATGATGAGATGGAGTCTTCTtcttataattattattattattgctttGGCATTATTatggagaagaaagaaagaaaaaaagaaaaaaatgtgttgtttaatGTTGTACAGAACATTATAGCACTAGAGATGTTGTGTTTTTAAAAAGAGAGCATAAACCCAAGTGCTAGTCccacccactcctccctcccaTTGGCAGATAGGACAAGTGCCCTGCCAACGATAGGAGAAGTGACCTAAAGGTAACGGACTTGCCCTCAAACTGACAAACATGTTCGATCCAATGAATCTAATCCACATCGTACTCTTGAATTACCCACAGAATATgtcatatttttatttaaatgctttaaccaggcaagtcagttaagaacaagttcttatttacaatgacggcctaccccagcgatgctgggccaattgtgcatcgccctatggtactcccaatcacggccagttgtaatacagcctggaatcaaaccaaggTCTTTagggacgcctctagcactgagatgcagtgtcttagaccactgcaccaatTTGGAGCACTATATATAATGTGATAATATGTGATAATATGAATGTCCCAGACAGGCAACAGGCAATCTTAAATATTTCCTCAATTGCTGTTTGCACTGAAAATCTCCCTGAAACATGCTTGAAATCTTTTAATTGGTGCCTAGCTACACTCAccagacagtttattaggtacacctatctagcACCAGTTCGgaccccccttttcctccagaaCAGACTAAATTATTGGGtcattctacaaggtgtcagaaacGTTCAAAAGGAGATTGGTCCATGCTGACACGATGGCATCACGCAGCtgctgcagattggacggcgGTACAGCCTGTTCCTTCTCATCCCAAATATGTTCTCTTTGGTTGATGTCTGGGGACTGCGCAGGCCACTCAAGTACAACTCACTGTCAtgttccaggcaatgtttttccactcctcagttGTCCAGAGTTGGTGATTGCGTGatcactggagccgcttcttcttgtttttagctgataggaatGGAACACTtggtggtcgtctgctgcaacagcccatccgtgacaagaaGTTGTGCGTTccaagatgccgttctgcacaccactgttgtagtgcgccgttatttgtctgtttttcGTCCCACTTGTTAGTTTGCATGATTCTTGCCATtttccttcgacctctcatcaacgagctgtttttgcccacagaactaccgctgactggatgtttttttatttgtagcaccattctcagtaaaccctagacactgtcatgcCTGAAAATCCCAGGAAGGCTGCCGTTTCTAATATATTGCTTCTGGCATGttgatcataccacgctcaaagttgcttaggtcattcgttttgcccattctaacgttcagtcgaacagtaactgaatgccttggtGCCTGTCTGCTTgatttatatagcaagccattgCCACATGATTCACTGTCTATAGGAGCAATCCATTTTCGTGAaaggggtggtgtacctaataaactgtccagtTAGTGTATATTGTTGACCCTTAATTTCTTAGTTGTTTTTTTCAAAGGAAAAAAATCTATAGTGGTGTGTGAGGGCATCCTATcataggttgtgtcccaaatggcaccgtattccctattaAATGccctgcttttgaccagggccatagggctctgatccaaagcagtgcactatagggtgccatttggtccaACACCACTGTCtgttggagaggtggagggaagtgCTGGGTTTTAGCTCTTGTGTAGATTACTGCCATTGCAGTGAGGGAAAAATGTACCTAACATAGTAGTAACTAATAATATGAGTTTGTGGacagattaaaaaaacaacattagAGATGAATAAACGCAAAGAAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU881132 lncRNA downstream 2589 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA downstream 2589 13917998 ~ 13943722 (-) False LOC110531536
TU881135 lncRNA downstream 2589 13917998 ~ 13943722 (-) False LOC110531536
TU881136 lncRNA downstream 2589 13917998 ~ 13943722 (-) True LOC110531536
TU881176 lncRNA downstream 8938 13936934 ~ 13937373 (-) True G773405
TU881139 lncRNA upstream 18905 13988898 ~ 14002018 (-) True LOC110531539
TU882057 lncRNA upstream 52701 14022694 ~ 14025846 (-) True LOC110531549
TU882086 lncRNA upstream 104362 14074355 ~ 14074597 (-) True G774158
TU882087 lncRNA upstream 105972 14075965 ~ 14102816 (-) True G774159
TU882109 lncRNA upstream 144292 14114285 ~ 14123191 (-) True G774181
XR_002474715.2 mRNA downstream 2557 13922844 ~ 13943754 (-) False LOC110531536
XM_036989188.1 mRNA downstream 66210 13864720 ~ 13880101 (-) True LOC110531533
XM_036989189.1 mRNA downstream 66234 13864720 ~ 13880077 (-) False LOC110531533
XM_021614749.2 mRNA downstream 114790 13823424 ~ 13831521 (-) True LOC110531530
XM_021614747.2 mRNA downstream 135463 13801901 ~ 13810848 (-) False LOC110531528
XM_036989255.1 mRNA upstream 7466 13977459 ~ 13986939 (-) False LOC110531538
XR_005053429.1 mRNA upstream 19789 13989782 ~ 14002060 (-) False LOC110531539
XR_002474721.2 mRNA upstream 52657 14022650 ~ 14025325 (-) False LOC110531549
XM_036989204.1 mRNA upstream 58926 14028919 ~ 14030784 (-) True LOC110532928
XM_036989219.1 mRNA upstream 63565 14033558 ~ 14039729 (-) True LOC110531540
TU880908 other downstream 246983 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 354223 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 949901 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 949901 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1974957 11970904 ~ 11971354 (-) True G771614
TU881137 other upstream 10335 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 279408 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 754061 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1268065 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1382314 15352307 ~ 15361319 (-) True G774702

Expression Profile