RNA id: TU881137


Basic Information

Item Value
RNA id TU881137
length 4005
RNA type TUCP
GC content 0.46
exon number 8
gene id LOC110531538
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13977459 ~ 13987582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagtctcttcCTAGCATGTTTCTAGCACTCAGAATATCAAGTTTAGCTCTTTGAATGCCAAGACTTACAGTCATAAAGCCTATTCTTTCTCAAATCAATTCAGATTCCATATGCAGCTCAATCAATATGCCACTATTGGCATTTGGTCTTGGTCTCGGTCTTGGGAGACCGAGACAGGCAggaatgttttgtttatttatactTATCTCAAATTGATTTacagtcacacacgcacacagcacagcgtacacacacacactcaggaagGCATGCattcatgtgcacacacacacacacacaacattgtaTATTACTCGAGTCATGTGACTTGAATGAACAAGACAGCCTGATATCGCAAACATTATTTCCTTAGATATGAAATCAGCCATATCAATGTTTTCACCATCAAGCCTTTTTATGTCATGTGAAGTATGAACTATTATAGGTtgtgtccctggtcaaaagtagtgctctggTCAATAACAGTtcactacagggaatagggtgccatttgaactGTAGACTAACTGTACTAAGTTACTCCAGTCCTGTTTTTGCTTTTAGAGTGTTGAGTCTGACTGAGTGTTGTGAGAGCGCCCTCTCTCTGTTGGAGGGTGAACTGCAGTCTATGGACACATCACCACTACCAGACTGTATCAAGACTGTTCCCCTGAGTGTGGATAAACACAGAGAGCTGATGACGAGCGTCCTCGTCGACCAACGGCTGACTGAGCTGCAGCTGAAGGGCGGGGCCTGGCTGGCAGAGCTGACCACATCAGGACTGGCACAGCGATCCCCAGACTGCAGGGCTGCGACCTCTAACCTCTATGATAGTGTGGACAACGCCCTCCACCGCCTCGTACATGTGTCCAATCACAGAGGCAGCGACCTGGAAGTCCTCGGTCGATTGGCTGACATGGTGGACAAACTGGAaaagCAAGCTCTATCTATTATGGTGTAGGATGCTGAGTTCAGGGAGGCAGTACGTGGCCGTGTTAACGGGTGTGGAGGAGACCTACCTGCCCCTCTTGGAGGGTCCAGACACCCCGTCCCCCCTCCGGGGGGAAGCAGACCTCCTTTTCCACAACTTGGCCAGCTTCAGCGCCTTCCACTCGCAGTACCTCCTCCCAGCCATGGAGGGAGCTCTACTGCAGAGTCTGCTGAAACAGGACCTCTTCAGTAAACGTAGATAGGTGTTTCTCCAGTACCCTCACTGCATATAGTAAGGACCAAACCAGAAGTGGACTCCTTGTTGGTCACTTAGGCTGCAGACTTCTTCAAGCTCAGACTCCttgccacccctcctctctccctcctgtccttccCCCACTGTCTCCAGTCCCCTACACAGACTGGAACAGTACTGTGATGTTCTGGAGGAACTGGGAGGGCTAAACCACGCCTCTGACTCCTTCCTCTCCGTCCTCAGACACGCCCAGCGCCACGGTGAGGACCTCCGGGCCAGCGACCTCATCGTCGGGTGTCCGGACCCGGTGGCGGAGCGTGGAGAGCTGGTGAGTCAGGTGTGTGGGAGGACCAGGAGGAAGAAGACCGGGGTGTGTTCCTCTATCAACCCCTCATCGTCTTCACCAAGCAGAAGAGCCTGGGACACACCGCCTACAGCTTCAAACACAGCACCAAGTGTCAGTGTGGAGAGGGCAGCCTGGACACACGATATCACTCAGCTCCTTTGGACCCACAACACAGGTATGACCTCTAAACCTTGGCATTACCCTCTCAGTCACACTGTTGTCATGACTGGCCTGCTCGTGTAAGGTTACCATGGACCACAATCCTACAGAGAGATCTCTGACACTCATCAGAGGGAAAGAGATCGAGAGCCATTGAGGTGGGGGGGGGTTTATGACACCTCACGCCCATTGTAAATCTTAAGGCAGCAGACAACATTCCTTTGTCCTctcactatggagaaccagcctcagaacattaacatGCAATAAATGGACTTGGGGACAATAGGtttcgtcagccacaatggtggtcatgacgatagatggaacaTGTCGTTTTGTTATATTATTAAAAGTTAAAGGTTTTCCTAATATGTGCCTGATGTTTGCATATTGTACATTGTGTGGAAAATGTTCAGAAAAAAGATAATGTTTTTGTAAAGAttaaatgtgaagttagttgtctaaattgGAGCTGAGTAAAATCCAGACCTTGCCtcataacttggtacgcccagagaactTGCCCTGAAGGCGGAAACGCCCATTTCTGACccgagggtataaaacctgtgagttaAGAATGAACATATTAGACTAAGTGACCCTgagctgcagccaaggtctgAGTGGTCAGCAAACCCAAAACGCAACACGAGGTTGAGGAGGACAAAGGAACCTTTTTACAACCTATTCTACGGACAAGTAGCTGTATCTAACGGGGGTGAATTCAAGCAGGACCACCCGGTCACCACTCTCCAAGGAATCGTGTGTCTACACTGTTTTCCTTCCCACGCTGATTAGCCCTCCTCCGAAGACCCCTTTTTCAGAGCAAGTGCGAGGAAACAGACCACTAAAAGAAAGGACACTGACACcgtgaggagaaacagagagttaCACCTGGTAACCGAAGATGGACCATCATCAGAGAAGTCGGAACCACGGTCCACGCAAAGACCCCTCATCAGAGATCTTCAACACGTAATTACATtgttatattctgacccataagagcggtaGTTTGGGGCAAGGTTAGGGTTGAAATAATCATAACTGACAAATGCACCCAATTGTGTTTTTCTCTCCCgtactctatctctctctcttttgaaatcGCCATTGTGTGTAACACGTGTCATATGGTGTTGGCCCGCTAGGGACCTGTTCATcgtactaagttctaatcaatagcctagactgtgtgcttgtgtatgtgtATCTTATATCATTTTAGCTTGTTAGCAAATAAATGATCAACtcaattggtgtggtacgaactcctTGGTGAGACTCGGGTTTGTGCAGATTCCCGGATTATgagacgttcagaatgagactgtagaggaaattGATTGACTAGCGACTGTTGTAAAAttaatattctgatattctttgagttaatctGGGAAATATAAACTCAATAAAAACCAAACTTTCCCATGGtaccccaggttaatgagttaataatgaCCTGATTCATCTAATCACGTAATTAGAAACCGTTAATTATTCGATGAACAGCAGTTGTCACATTAATCAATACAACGTCATGACACTATCTATAACACAGGTACGACCTCTAAACCCTGACCTttaccctctcacacacactatcCATAGCACAGGTATGACACCTGAACAGTCACctgtcccttctctcccctcattCACAACATTCTAACTTAGCCTTTCTCATTCTAACCTGTCACACGGTCATGTGACCAATCTTACTCCTGCCATCTACTACTTATAGATGCATCCACTGTATGtataagcctctctctctctctctctctctctcatgtctgaTAGAGACCATGTGTATTGGTCTGTCCAGTAAGATACTGCTAGATGTCACAGGAGCACCAGAAACATCTGAAATGGACTCTATCTACAGTCTGAATGACAGAGGTAcaaatgcactcacacacaccttaacGGACCATATTATGTGTAATgtatctctatccacagtaaaacgagatactttacctacaccttagccaactacatttaaactcagtttttcacaattcctgacattcaatctgagtaaaaattccctgtcttaggtcagttaggatcagcactttattttaagaatgtgaaatgtcagaataatagtagagagaatgatttatttcagcttgtatttatttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagcctaccacaagcttcccacaataatttgggtgaattctggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU881132 lncRNA downstream 36606 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA downstream 36606 13917998 ~ 13943722 (-) False LOC110531536
TU881135 lncRNA downstream 36606 13917998 ~ 13943722 (-) False LOC110531536
TU881136 lncRNA downstream 36606 13917998 ~ 13943722 (-) True LOC110531536
TU881176 lncRNA downstream 42955 13936934 ~ 13937373 (-) True G773405
TU881139 lncRNA upstream 1316 13988898 ~ 14002018 (-) True LOC110531539
TU882057 lncRNA upstream 35112 14022694 ~ 14025846 (-) True LOC110531549
TU882086 lncRNA upstream 86773 14074355 ~ 14074597 (-) True G774158
TU882087 lncRNA upstream 88383 14075965 ~ 14102816 (-) True G774159
TU882109 lncRNA upstream 126703 14114285 ~ 14123191 (-) True G774181
XM_021614753.2 mRNA downstream 10335 13946311 ~ 13969993 (-) False LOC110531537
XM_036989164.1 mRNA downstream 10335 13946311 ~ 13969993 (-) True LOC110531537
XR_002474715.2 mRNA downstream 36574 13922844 ~ 13943754 (-) False LOC110531536
XM_036989188.1 mRNA downstream 100227 13864720 ~ 13880101 (-) True LOC110531533
XM_036989189.1 mRNA downstream 100251 13864720 ~ 13880077 (-) False LOC110531533
XR_005053429.1 mRNA upstream 2200 13989782 ~ 14002060 (-) False LOC110531539
XR_002474721.2 mRNA upstream 35068 14022650 ~ 14025325 (-) False LOC110531549
XM_036989204.1 mRNA upstream 41337 14028919 ~ 14030784 (-) True LOC110532928
XM_036989219.1 mRNA upstream 45976 14033558 ~ 14039729 (-) True LOC110531540
XM_036989256.1 mRNA upstream 54702 14042284 ~ 14044513 (-) True LOC110532929
TU880908 other downstream 281000 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 388240 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 983918 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 983918 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 2008974 11970904 ~ 11971354 (-) True G771614
TU882202 other upstream 261819 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 736472 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1250476 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1364725 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1637620 15625202 ~ 15625920 (-) True G774954

Expression Profile