RNA id: XM_036989219.1


Basic Information

Item Value
RNA id XM_036989219.1
length 1767
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110531540
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14033558 ~ 14039729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTGAATGAACTACTTTCACTACTAACTATTTAACAGGCCTATGTTAATAACACTAACAAATAATTGTCAGTCACTAGTGAATGGAGGGTAGGAGAAAGGTAGGATGATGGTAGGATGATGATTTACTGGGAAAGATGGGTTGATCTGTGACTGTCTGAAGGTTGGAATTAATGAGTGTTGGAATAAATACATAGACACATGAACAGTATAAATGTTTAAGGTCCTCCGATCTGGGGTGAGTGTGAGGATGGGAttactgtgtgttttgtgtttagtTATTAATGTTTTGTGTTTTGGTTTCAcggtgtgagaggtgtgtgtgctgGTCGTGGTGGTTGTGTGTGCGCTCGCTTCCATACCAGCCTGGGCATCAGGCAGGGCTTGGTCCTTCCCGCCCTGGAAAATCCCTTTGGGCAGGGGGCTTCGCCATGCCGGCATCTTAGGCAAGTGGGGACGAGTGCTcccactgaccagagcacccactgacGCGAGCACCCATTCACATTGTCTTTGTaatgtatttttgttgttttaatagcaataataataattgtcCTCAGTAATGTTAGAAATTTGTGTTTAAGACATCATGCTAGAGATAGATAATAAAAAGCCTAATACATAATTTGGCACCAAACAATTCACCTGAATACTTGTTTTTTTTGGATGAAGTTCTCTTGAACAAGACTGGATATTTGTTTCAATATCTTCTAACATGGAGGCTCATGTATGCTCTTATATTAAGATCATTCCAGGGGTTTTTCCCTGCCTTTTTATATGTTAAAATTATAGATTTGTAATTTAAACTGAAttattattacagtgtaattatgaCTAGTTGTAAAGTTGTTACTAGTGTTTAACTTTCTGTCTAAACAAGAGAGCTTCAATGACAAAAGGTCAGAGTTTATATTTCCACAGGTGTTTGAATTACATTGTCAATACTCTGCCGGCAGAGTACTGTATTTTTGTAGTTATAAAATGTCTTTAATTTCATTAGGAATATTATAATTTGTAAATTGATTCATTGGGTCACATGTCAAATATCATGTCACATGAGATATCCTATGTTTTCTCTCCCGAAActcttactctgtctctctctttcgctctctctcttttcctctctctctctcactcacacacacactcacacacacacatctgctatACAGAGAAATGCTGTGTTTTCTCTGGGTTCTCCTCTCTCTGACTGCTTTACAAGTGGAGGGTTTCAGTGGGGGAGGATCTTCCATTGCTTCTCAGTGTGGCTCAATGCTACCTGGTAATAGTTTTCATGGCAGCACAGGGCAGAGCTCTTCCTCACCATACACTGTCACTGTCAACCAGACCAACTACCAGCCAGGAGACACCATCCAAGtgACTCTGTCAGGAACCTTCACCTATAGAGGGTTTCTTCTGGAGGCCCATGAGGAAGGACAGAACAAGGCTGTGGGAACGTTCTCTCTCGGCAGTGGGACTGGGATCGTTCTTGTGCCTTGCAATGGGATCGCAGTCAACATTTATGCAGACCTCCAGTGTATTTTGGATTGCAGTGCCTAGCATGACAGTTAACCGACTGTCCTCAATTGTTGTCACCACCACaagtgctcctactacaacaactactgctcctACTAAAACAACTACTGCtcatactacaacaactacagctcctactacaacaactacagctcctactacaacaactacagctcctactacaacaactactgctcctACTAAAACAACTACTGCtcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882057 lncRNA downstream 7712 14022694 ~ 14025846 (-) True LOC110531549
TU881139 lncRNA downstream 31540 13988898 ~ 14002018 (-) True LOC110531539
TU881136 lncRNA downstream 89836 13917998 ~ 13943722 (-) True LOC110531536
TU882086 lncRNA upstream 34626 14074355 ~ 14074597 (-) True G774158
TU882087 lncRNA upstream 36236 14075965 ~ 14102816 (-) True G774159
TU882109 lncRNA upstream 74556 14114285 ~ 14123191 (-) True G774181
TU882174 lncRNA upstream 271731 14311460 ~ 14331902 (-) False LOC110531554
TU882229 lncRNA upstream 296790 14336519 ~ 14336804 (-) True G774281
XM_036989204.1 mRNA downstream 2774 14028919 ~ 14030784 (-) True LOC110532928
XR_002474721.2 mRNA downstream 8233 14022650 ~ 14025325 (-) False LOC110531549
XR_005053429.1 mRNA downstream 31498 13989782 ~ 14002060 (-) False LOC110531539
XM_036989255.1 mRNA downstream 46619 13977459 ~ 13986939 (-) False LOC110531538
XM_021614753.2 mRNA downstream 63565 13946311 ~ 13969993 (-) False LOC110531537
XM_036989256.1 mRNA upstream 2555 14042284 ~ 14044513 (-) True LOC110532929
XM_036989212.1 mRNA upstream 30306 14070035 ~ 14088275 (-) False LOC110531545
XM_021614759.2 mRNA upstream 44117 14083846 ~ 14088275 (-) True LOC110531545
XM_036989203.1 mRNA upstream 114620 14154349 ~ 14191312 (-) True ndrg2
XM_036989208.1 mRNA upstream 173717 14213446 ~ 14223820 (-) False LOC110531544
TU881137 other downstream 45976 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 334230 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 441470 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 1037148 12994269 ~ 12996410 (-) False G772877
TU882202 other upstream 209672 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 684325 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1198329 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1312578 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1585473 15625202 ~ 15625920 (-) True G774954

Expression Profile