RNA id: XR_005053179.1


Basic Information

Item Value
RNA id XR_005053179.1
length 1935
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC110532998
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14255479 ~ 14259219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGCGTTGTTATTCTAGGTTTAGTTACCTGTTTGCACTAGTcatatagcttcacggtttgttcaGGATTCTCTCTTTATTAAAAGAGTTATGTAcgcttatcacgctgcgccttggtttCCTCATTATTACAACCGTGacaatacaattgaacaaagctgaataaaatataaatattttctccCAAAATATTTGAGGCAGTGTGCACATGCGGccattctgtgttgagcagttaataAAGAAATAGATACTCGtattgtcacgcctgctcccgctttcCCCCGCGCCAGGCATCAGTGATTATTGgattcacctggactccatcacttctgTCATTACCTTCCCTCTATATGTCTGGTTCCCCGCTCTGTTTCCTGCTTCAGCATTGATTGTCGTATGTCCTTGTTTACCCGCCTAATGGTCTTCACATCTGACTCATtacgaaaaaaaaaaaatcttcatccagtttgagATGAATGAGTTCATGCGCATATCTACTGCACCTCTGCTATCTACATTATTTGTTGAGCTCAACCGGGTACTCTCCACACATGGTGGAGATCTTTCGATGCAAAGGTTTGGAAGAAAAAGGATACATCTCATGGTGGCCATGTCCAAGGATGACACAATACATACAAGACGGGCATGCGTCCTCAAGTCCTTGTGCATCTACCTAAACGAAGACCATGAGAAACTTGTGAAGGAATATATGACCTCAAGTCCAACGCTTCCATGGAGCAAACTGTGATGTCATACAGAAGGAGGGAGCGGAGCCTGGAGATGACCCAGAGGACATCGGTGTCCTGATTGAAGAATATTCTTCTAAATCTGGATGGGCAGAGGTTGTCGTCCAAGGCGCGGATCCTAAAAAACAAGCTTCTGGAGTGACTAAGCTTGAAGAAGACTGACGCCTGGAATTTGTAAtgcatattttttttgtgtttaacTTTGGAAGTTGAAAATTAGAAGTCATACAATTTTTCAAAATAACTATTTAATTTAGTTTGCTCAATGGACTGAGACTAAGATGGTCTCATAGGTTGAAAGTCTCCTACATTTGTGTGTTGGTGGAGCAGACACAGAGCAGTGTTGTTGAACACATGTTCATTAAATAGAATAAATACGTTATTAATGGTTATAGCCTCCTTAAAATGTAGcacttgtatttaaaaaaaacattttttttaaccaaaatGGCAAAAAGATTGTGCAAGCAACATTGCAGTCATTTTTCACTACTTCTGATTTATTTGTACATTATTTGCAATGCGCATGTGTAGAATGTAATAATTCAGTGTTTAAAACAGTGTTAAAATTCATTTTGTTGCAGTCATGCACATCTTGCTGGATTATTTGTTAACTTTGTTTTTATTACGGGCCACATATTTTGTATGTTCCaatgtttattttattacatttttataaatgtgTTTAATTGTTGCACTTAGACTTGCTAAACTTGAAATGACAGAAGTCATGCACAAATCCTTTTCTTAATGAGCCTCGGTTTTTTTGTTGGCAAAAATATTCTACATGCATTTGTTGAAAAAACTGTTGAATGTTAACCTTAAAGGACAGAAGTGCACACATTTTGCAAGACTGTTTAGTGTATGATTTGGAAGTGAATACAGCATTCTCAAATGCATAATGTGGTTAATATTTGACACAAACAAAATAAGTCTTGGCGAAAATTGGTTTATTTGGTGCTTTTCATTGAGTGCTGGAAGGAATTAAGTCTCTTACTGTTTTAGTCAGTAATTAAGTTAAAAAGGACAATATAACATTTTGGCGATGTGTGAAAGAGCTAATGATGGTAACGATCTGGTGTAATGTTAGGTTCACAGGAGGCCAGCGGTTTTCCATTTGCGTAATCCTTCAactgtgctaaactgttctgatgaaagaagcaataaaactggccttcgttagactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882109 lncRNA downstream 132288 14114285 ~ 14123191 (-) True G774181
TU882087 lncRNA downstream 152663 14075965 ~ 14102816 (-) True G774159
TU882086 lncRNA downstream 180882 14074355 ~ 14074597 (-) True G774158
TU882057 lncRNA downstream 229633 14022694 ~ 14025846 (-) True LOC110531549
TU881139 lncRNA downstream 253461 13988898 ~ 14002018 (-) True LOC110531539
TU882174 lncRNA upstream 52241 14311460 ~ 14331902 (-) False LOC110531554
TU882229 lncRNA upstream 77300 14336519 ~ 14336804 (-) True G774281
TU882233 lncRNA upstream 81041 14340260 ~ 14340725 (-) True G774285
TU882242 lncRNA upstream 101736 14360955 ~ 14361175 (-) True G774294
TU882191 lncRNA upstream 112127 14371346 ~ 14371628 (-) True G774246
XR_005053430.1 mRNA downstream 4571 14249534 ~ 14250908 (-) False LOC118966145
XM_036989185.1 mRNA downstream 24385 14225785 ~ 14231094 (-) True si:ch211-63p21.2
XM_036989206.1 mRNA downstream 31635 14213446 ~ 14223844 (-) True LOC110531544
XM_036989205.1 mRNA downstream 31639 14213446 ~ 14223840 (-) False LOC110531544
XM_036989210.1 mRNA downstream 31639 14213446 ~ 14223840 (-) False LOC110531544
XM_021614779.2 mRNA upstream 23586 14282805 ~ 14287169 (-) True si:ch211-63p21.8
XM_021614780.2 mRNA upstream 35142 14294361 ~ 14310555 (-) False LOC110531552
XM_021614782.2 mRNA upstream 35142 14294361 ~ 14310556 (-) False LOC110531552
XM_036987376.1 mRNA upstream 35142 14294361 ~ 14310556 (-) False LOC110531552
XM_021614781.2 mRNA upstream 35142 14294361 ~ 14310727 (-) False LOC110531552
TU882202 other downstream 1322 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 267897 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 556151 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 663391 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 1259069 12994269 ~ 12996410 (-) False G772877
TU882399 other upstream 464835 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 978839 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1093088 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1365983 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1523138 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile