RNA id: XM_021614784.2


Basic Information

Item Value
RNA id XM_021614784.2
length 4886
RNA type mRNA
GC content 0.57
exon number 15
gene id LOC110531552
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14294361 ~ 14311147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccaaggcagcaacgagacaccaaagtacggctgggcacttacaagcaatggtgcttttcaaaacttttggggacacccgagtggatctacagctcaacgaacAAGCGCGCAGGGCAACGGAGCTGCACAATGAAAAGTCTGGATCCAGCACAGAAAGAGAAGATTGAAAAGTACTTTCAGGTTCGCCGTAAATCTGGTGGTGGAGACTGCGGACCAATAGACAATGTTGGTGACAACGTTTACAAGATCGCATTTTTTGACCCAACAGAGTCACCAGtccctcccattccatccctccctccctgtccagaCATCCCCACCTGGTTTCCTAGAGCATGAACTCCATCTAGACTCCTACCTCCTGAGATACCTGAAGGAGAGCCCTGGGGCTGGAAGAGACCTGCAGCAGCAGCTGTCCTCTCTGGGCTGCTCTGTCCACCTCCATCCAGAGGACAAGAGGGCAGTGGTCAGAGGCTCAGGCCAAGCTGGGTCATGTGGAGATGGGGTTGGGGTGGGACCATGGAAGGCACAGGTCGAGAGACTGTTCAAACAGCTCCAGGAGCGGTACACATGCCACTATGAGGTAGACCCACTTAAGCTCCAGACTCTGCTGCAGAGCAGTACCCTGGGTTCGGAGGATGTGAGGGTTTACTGCGAGACAGGGGAAGGGTTTGCGGTGGTGGTTGGGGAGGGGCCCGAGGTCCAGGCCAAGCTGAAGGAGCTGGAGGCCTTCCAGGGTCAGGGTCTGAGCTCCTGGAAGCAGGAGAAGATCAGCACCACCTGTCGTCTGGGACAGTCCAAGCTCCGGCTTCTAGAGGAAGTTATAGAGAAGGATCTAGGTGAGGCTGTTCCAGGGGTGAGGGTGACGCGCAGTGACTCATCTCAGCTGGTGCTGGAGGGTTCAGCAAGTGATGTCCGGACAGCCAGACAGTTAGTTACAGATAAAATCTCTCTGGTGCTGGAGCGGGTGGTGCCTGAGGTGTCCCCCCACCTCCTGTCCTTCCTGAGGGATGAGTATGGGAGGCCTGGGAACCTGAGCAGTCTGCTGGGGTTGGGACTCCATGTGGAGGTAGAGTTGGGGGATACAGAGCTccgtctgttctccctctcctctgggaAACTGGAGCAGGCTGAGAAGGATCTGCTGGGGGAGTTTGGGGAGGAGAAGATTGATTTGCCTAACTGTGGCACCCTGCCATCTGAACTGAAATCCAAGCTTGAGAAGAAGGTGAAGGAGATGAACCAGAGCAGATGCAGGGTGGTGGCAAGGTATGGTCCTGGGTGTAGAGTGCAGTTGCTGGGCCACCTGAAGGAGGTTCAGGAGCTGAGGGAGGAGATTGGGGCCTTTCTGATAGACCAGTCCAGTGTGGAGGAGACAGTGTGTCTCCCTTACCCGGAGATTGCTGACCACCTACCAGAACTGCTGGAGAGGATCGGTGTGGAACACACTGGGGTGACCCTCTACCCCTCAGCCATCCACCCCACTGTGGTGCTCTGTGGACCCTCTGTCCGGGTGGCCCAGGTTAGGGACAGGTTGGGTCCCGCTCTGGCCTCCTTGGTCCACCAGACTGTGACCATAGACCAGCCGGGGGCACTACGCTACTTCCAGGGCGTGGGAAGGGAGTACCTGGAAGTGGTGGGTCGCTCTCAACACTGCCTCATCCAGCTGCACAACCACGGTGGTGTTGCCGGCGAAGCTCGCGCCGGACCAAGACTGGAGGAGATGGTCACAGCCACCAGCTATCGCCTCCAGCGGGGGCTGCAGGTTGTGGTACGTCAAGGTGACATCACCAAGGAACGGGCGGATGCGCTGGTGAACGCAGCCAATGAGGACCTGGATCACGCTGGTGGCGTGGCTGCAGCTCTAAGCCGTGCGGGGGGGCCTGAGGTACAGCAGGCCAGCAGAGATCTGGTTAGGCAGATAGGTAGAGTGCCCACAGGTACAGTGGTAGAGACTACAGGAGGGAAGTTGCCTTGTAAGATGCTGCTGCACGCAGTGGGACCAGTAGGGGGCAGCGTAGGTGGGAAAGAGCACCCTCTGCTGGAGAAGACAGTAAAGGCAGTCCTGGATCTGGCAGAGACCCTGGAGCTCCAGACCCTGGCCATGCCCTGCATCAGCTCGGGGATATTCAGCGTTCCTCTGAAGGTGTGTTCTGAGGCCATAGTCTCTGCAGTGAGGGACTTTGGGAGGGAACAGCGCATCCTTACCAAGGTCACTCTGATTGATGTGAGTGGAGAGGCAGTGAGAGCCATGCAGGAGGCCTGTGATAGGCTGttagaggggaagagggagtttCCTGGGTTGGAGGTAGAGTCcagcaccaccactaccactacacatgCTCCTCAGAGAGACACCACTGCTGCCTCCACCAGGGGACCAGTGGCTCCAGAGGTCTGTGTCCAGGTGGAGATCATCCAGGGAAGCATAGAGAAACAGGAGgTGGATGCCCTGGTGTCCCCCATGGTTGGTAGTGACCCTCTCTCCTCCCGAGTGGGTAATGTCTTGTCGGAGGCAGCTGGACCGGCGCTGATGACAGCGTTTCTGAGGGAATTAGGGGGACGGACTGCACCTGGTGACAACGTCCTGGTGGAGGGATtgtctggtctcagctctggccGCGTCTTCTTCCTCAGCTGTGCACACTGGGACAACAACCCCCAAGGACCAGCAGTACAGGCTCTGAGGCAGGGTGTGAGGAGAGTTCTAGCCTCTTGTGAGATCCAGGGATTCTGTTCTGTTGCCTTCCCTGTAGTTGGAACTGGTGTGGTTCTCCAGTTCCCTCACAATGTGGTAACACAGGTTCTGCTAGAAGAGATCCGTAGGTATGAACAGAATCGAGCGAGCAGAACCCCCTTCCTTGTCCGCATTGTTGTCCATCCCAATGACAGAGATTCTACCAAGGCTTTCCAGACTTCCCAGTGTGCTTTGCATGTCAGAGGGTTTGTAATGGATGCTTCTCCAGATCAGAcCTCCTTCTATCGCCACATCTCAACCACTCAGGACGAGGTCTCTGCCACGCTGGGCAGTGTCAAGCTACAACTGGTCTTTGGCGACATCATCCGtgagatcactgatgtcatcgtCAACACCACAGACTTCTCAGCCAACCATTCAGGTGTCTCCAAAGCTATTCTGACTGCTGCAGGTTCCACAGTCCAAGCAGCGTTAGCACAAGTGGGTGTGCCAGGAGACTTGATGTGCACCACAGGGCCCGGTGCACTGGGCTGCAAGGAGATCGTTCACGTCAGCTTTAAACGCGACACACAGAGGATCAGCAAGGTCTGTGGGAAGATACTGAAACAGTGTGAGAGAAAGGGCTACCGCTCTGCAGCCTTCCCTGCAGTCAACActgGAGCTGCTCGAGCAGACTCTGGCTCTGTGTGTAAGGCCATGTTGGATGGCATGGCGTCAAGTGTGAGGGATTTGTCCcccaacatcctctctgtcatcCGCATTGTCATGCTGCAGAGACCCGTCTTCCAGGCATTCAGgtcAGAGCTGGAGAGCCGACTGGGAGCTATCGCTCCAATCCCAACACTGAaagAGAGAGCCCAACAGATACTGAAGAAGAAACTGAGGATCAGCTTTTCCTCCCCCTCGCATGgctcccttccccctcctcatACCCTTCCAGGCCTCACCATCACCCCCTGGAGACCGCCCCCGGTGGTGCTGAGCGTGGTGGGGCGCGGGGCGGACGCCATCAGGGGGGCCAGGCGGGAGCTGGAGGCCATCTTGCAGAACCAGCTGACTCAGAGAGATGTGACGGGAGAGGACCTGTGCATGCTGGGAGAGGTGGAGCTGCAGGCCGTGCAGAAGAATGCCAAGGTCCTGGGAGTGAGCCTGGAGCTGGGTAGAGTTCAGAGGGCAGGAGGGGTGGATGTTGGAGCTGCGACTGGAGAGGGGTTTTATGTTCTCCGAGGCCTGAAGGAGGACGTTCTGAGCGTGCGCGAGGTGCTGGACAGTGCGCTCAGTGGCGCCCTCCGTAGGGAGCTGCAAGAGAGAAATGAGGTACTAATGGCCCTCAGTGTCCAGTGGTCTATGTGCAGGCATGGTGACGTTTGGGAGGAGCTGGGGATGCATGACAACTACCATCTGGAGCAGGCACACCTAAGAGGAGATGTCTCAGCAGAGCTGGATGTCCCAGATGGGAGCAAAGTCAGGGTGAACCTGAAGAACAACAGGGCCACTGACTGGGAAACGGGTTGCACCTATAAGATGAAGCGAGAGGAGAGTGAAAAATTGCCATCGCACTGGGATGATATGGCCGCTGGTGAAACGCAGAAGAGAGTGCTGCTCTTGCCTACCTCGTCAGAGTACCAGGCGGTGGCACAGGCATTCCAAAGCACCACGGCAACACAAGTCGCCATCCACAAAATCGAGCGTGTGCAGAATGTATTTCTGTGGCAGGCGTACGCATTGTGTGAGCAGCGCATCCGGGCCAAGAACGGAGCAGCGGCGGTAGGGGTACGGAAACTCTACCACGGGACGGCAGCAAAAACCTGTGACGCCATTGAAAGTAATGGATTCGACAGGAGCTATGCTAATATTACAGCATATGGAGTGGGTGTGTATTTTGCTGTGAACGCCAGCTATTCAGCCCATCCCAGATATAGCCCTCCTGATGGTTCTGGGCACAGGCGTATGTACGTTGCACGTGTCCTGACCGGGCGCTATACCCGGGGTGACCCCTCCATGAAGTTCACCCCTTGTCGCTCCCCCACAGATTCCGCTGACTGCTATGACAGTCTAGTGGACAACCTGCAGACACCCAGCATGTTTGTCATCTTCCACGACGACCAAGCGTACCCAGAGTACCTCATCACCTTCATATGATAGTGGGCCTACATAATGAATTAGAAAGCATTCGCAATCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882109 lncRNA downstream 171170 14114285 ~ 14123191 (-) True G774181
TU882087 lncRNA downstream 191545 14075965 ~ 14102816 (-) True G774159
TU882086 lncRNA downstream 219764 14074355 ~ 14074597 (-) True G774158
TU882057 lncRNA downstream 268515 14022694 ~ 14025846 (-) True LOC110531549
TU881139 lncRNA downstream 292343 13988898 ~ 14002018 (-) True LOC110531539
TU882174 lncRNA upstream 733 14311460 ~ 14331902 (-) False LOC110531554
TU882229 lncRNA upstream 25792 14336519 ~ 14336804 (-) True G774281
TU882233 lncRNA upstream 29533 14340260 ~ 14340725 (-) True G774285
TU882242 lncRNA upstream 50228 14360955 ~ 14361175 (-) True G774294
TU882191 lncRNA upstream 60619 14371346 ~ 14371628 (-) True G774246
XM_021614779.2 mRNA downstream 7192 14282805 ~ 14287169 (-) True si:ch211-63p21.8
XR_005053179.1 mRNA downstream 35142 14255479 ~ 14259219 (-) True LOC110532998
XR_005053430.1 mRNA downstream 43453 14249534 ~ 14250908 (-) False LOC118966145
XM_036989185.1 mRNA downstream 63267 14225785 ~ 14231094 (-) True si:ch211-63p21.2
XM_036989206.1 mRNA downstream 70517 14213446 ~ 14223844 (-) True LOC110531544
XM_036987379.1 mRNA upstream 728 14311455 ~ 14404868 (-) False LOC110531554
XM_036987381.1 mRNA upstream 39006 14349733 ~ 14405048 (-) False LOC110531554
XM_036987380.1 mRNA upstream 39006 14349733 ~ 14405052 (-) False LOC110531554
XM_021614793.2 mRNA upstream 86863 14397590 ~ 14405052 (-) False LOC110531554
XM_036987383.1 mRNA upstream 131756 14442483 ~ 14446637 (-) False LOC110531560
TU882202 other downstream 40204 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 306779 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 595033 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 702273 13590253 ~ 13592088 (-) True G773163
TU880579 other downstream 1297951 12994269 ~ 12996410 (-) True G772877
TU882399 other upstream 413327 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 927331 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1041580 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1314475 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1471630 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile